Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449007 Ptep1.0/2.0 NW_024969596.1 1733595 1745111 + ribonuclease H2 subunit B aug3.g2522 LOC107449007 0
LOC107449001 Ptep1.0/2.0 NW_024969596.1 1752602 1758710 + adhesive plaque matrix protein-like aug3.g2522 LOC107449001 0
LOC122270518 Ptep1.0/2.0 NW_024969627.1 594837 605854 + uncharacterized LOC122270518 aug3.g16022,aug3.g25220 NA 0
LOC107456404 Ptep1.0/2.0 NW_024969703.1 1017051 1033685 + protein FAM133 aug3.g25229 LOC107456404 0
LOC107456407 Ptep1.0/2.0 NW_024969703.1 1046941 1056637 - 40S ribosomal protein S10b aug3.g25228 LOC107456407 0
LOC107456402 Ptep1.0/2.0 NW_024969703.1 1061560 1084096 + slit homolog 1 protein-like aug3.g25227 LOC107456402 0
LOC107456401 Ptep1.0/2.0 NW_024969703.1 1085347 1089219 - serine hydrolase-like protein aug3.g25226 LOC107456401 0
LOC107456362 Ptep1.0/2.0 NW_024969703.1 1113836 1115357 + histone-lysine N-methyltransferase Smyd1-like aug3.g25225 LOC107456362 0
LOC107456398 Ptep1.0/2.0 NW_024969703.1 1123076 1153528 - cell division cycle protein 27 homolog aug3.g25224 LOC107456398 0
LOC107456406 Ptep1.0/2.0 NW_024969703.1 1158528 1169669 + uncharacterized LOC107456406 aug3.g25223 LOC107456406 0
LOC107456397 Ptep1.0/2.0 NW_024969703.1 1210210 1228413 - ras-like protein family member 10B aug3.g25222 LOC107456397 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02