Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449002 Ptep1.0/2.0 NW_024969596.1 1714450 1727867 - presenilins-associated rhomboid-like protein, mitochondrial aug3.g2524 LOC107449002 0
LOC107456525 Ptep1.0/2.0 NW_024969618.1 110060 125331 - delta-like protein 1 aug3.g25248 LOC107456525 0
LOC107456529 Ptep1.0/2.0 NW_024969618.1 366912 393789 - alpha-soluble NSF attachment protein aug3.g25249 LOC107456529 0
LOC107455509 Ptep1.0/2.0 NW_024969703.1 12093 51814 + zinc finger protein 546-like aug3.g25246 LOC107455509 0
LOC122268915 Ptep1.0/2.0 NW_024969703.1 19704 27494 + uncharacterized LOC122268915 aug3.g25247 NA 0
LOC122268928 Ptep1.0/2.0 NW_024969703.1 45211 51600 + zinc finger protein 37A-like aug3.g25246 NA 8e-88
LOC122268914 Ptep1.0/2.0 NW_024969703.1 56612 65485 + uncharacterized LOC122268914 aug3.g25245 NA 0
LOC110282082 Ptep1.0/2.0 NW_024969703.1 113254 131658 + zinc finger protein 300 aug3.g25244 LOC110282082 9e-117
LOC122268931 Ptep1.0/2.0 NW_024969703.1 131167 134374 + zinc finger protein 350-like aug3.g25244 NA 9e-42
LOC122268932 Ptep1.0/2.0 NW_024969703.1 134455 148147 + zinc finger protein 54-like aug3.g25243 NA 2e-174
LOC107456386 Ptep1.0/2.0 NW_024969703.1 136954 143615 + zinc finger protein 175 aug3.g25243 LOC107456386 3e-133
LOC122268933 Ptep1.0/2.0 NW_024969703.1 182308 188111 + zinc finger protein 28-like aug3.g25241 NA 4e-103
LOC110282086 Ptep1.0/2.0 NW_024969703.1 189236 194490 + zinc finger and BTB domain-containing protein 46 aug3.g25241 LOC110282086 2e-113
LOC122268918 Ptep1.0/2.0 NW_024969703.1 208785 215798 + uncharacterized LOC122268918 aug3.g25240 NA 2e-92
LOC107456375 Ptep1.0/2.0 NW_024969703.1 221014 262105 + oocyte zinc finger protein XlCOF6 aug3.g25240 LOC107456375 1e-146
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02