Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107449012 Ptep1.0/2.0 NW_024969596.1 1581171 1669693 - dynein axonemal heavy chain 2 aug3.g2526,aug3.g2527 LOC107449012 0
LOC107456613 Ptep1.0/2.0 NW_024969614.1 296317 333420 + AMME syndrome candidate gene 1 protein homolog aug3.g25270 LOC107456613 0
LOC107456607 Ptep1.0/2.0 NW_024969614.1 353124 1062344 - CUGBP Elav-like family member 4 aug3.g25271 LOC107456607,LOC107456606 0
LOC107456609 Ptep1.0/2.0 NW_024969614.1 1404331 1482034 - CUGBP Elav-like family member 4 aug3.g25275 LOC107456609 0
LOC107456615 Ptep1.0/2.0 NW_024969614.1 1563517 1578351 + putative deoxyribonuclease TATDN2 aug3.g25276 LOC107456615 0
LOC107456608 Ptep1.0/2.0 NW_024969614.1 1581596 1652626 - polyamine-transporting ATPase 13A3 aug3.g25277 LOC107456608 0
LOC107437870 Ptep1.0/2.0 NW_024969781.1 2274121 2351047 - pseudogene aug3.g25272 LOC107437870,LOC107437863 0
LOC110283146 Ptep1.0/2.0 NW_024970438.1 453694 454460 + uncharacterized LOC110283146 aug3.g25278 LOC110283146 3e-138
LOC107438888 Ptep1.0/2.0 NW_024971012.1 83778 143941 + neurogenic locus Notch protein-like aug3.g13436,aug3.g25278,aug3.g13437,aug3.g22518,aug3.g19882 LOC107438888,LOC107440282 0
LOC107456715 Ptep1.0/2.0 NW_024971918.1 10123 43673 + fibrillin-1-like aug3.g25278 LOC107456715 0
LOC122272802 Ptep1.0/2.0 NW_024972878.1 2936 10289 + uncharacterized LOC122272802 aug3.g25278 LOC107456715 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02