Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268735 Ptep1.0/2.0 NW_024969665.1 708755 711787 + uncharacterized LOC122268735 aug3.g26016,aug3.g5006,aug3.g20683,aug3.g2786,aug3.g26717,aug3.g10174,aug3.g14253,aug3.g462,aug3.g384,aug3.g18711,aug3.g14703,aug3.g24087,aug3.g27923,aug3.g4590,aug3.g1290,aug3.g410,aug3.g22180,aug3.g97,aug3.g3486,aug3.g27744,aug3.g7211,aug3.g22976 NA 0
LOC107436385 Ptep1.0/2.0 NW_024969665.1 718008 797350 - insulin-degrading enzyme aug3.g26017 LOC107436385 0
LOC107436381 Ptep1.0/2.0 NW_024969665.1 816537 950820 + protein BCL9 homolog aug3.g26018 LOC107436381 0
LOC107436331 Ptep1.0/2.0 NW_024970421.1 5356 10868 + uncharacterized LOC107436331 aug3.g26011 LOC107436331 2e-107
LOC107436330 Ptep1.0/2.0 NW_024970421.1 11717 33335 - DNA-directed RNA polymerases I and III subunit RPAC1 aug3.g26010 LOC107436330 0
LOC107449194 Ptep1.0/2.0 NW_024970804.1 145788 159995 - 60S ribosomal protein L36 aug3.g2601 LOC107449194 0
LOC122268305 Ptep1.0/2.0 NW_024970808.1 31 16399 - phospholipase A2 homolog aug3.g26011 NA 1e-58
LOC107436319 Ptep1.0/2.0 NW_024970808.1 50665 64847 + WD repeat-containing protein 86 aug3.g26012 LOC107436319 0
LOC107436332 Ptep1.0/2.0 NW_024970808.1 151241 185937 + LIM domain-binding protein 2 aug3.g26015 LOC107436332 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02