Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437524 Ptep1.0/2.0 NW_024969708.1 3477144 3495407 + homeobox protein HMX3-B-like aug3.g26282,aug3.g23073 LOC107437524 0
LOC107437523 Ptep1.0/2.0 NW_024969708.1 3558035 3583911 - spondin-2-like aug3.g26281 LOC107437523 0
LOC107437535 Ptep1.0/2.0 NW_024969708.1 3595655 3641492 - transforming acidic coiled-coil-containing protein 1 aug3.g26280 LOC107437535 0
LOC107437614 Ptep1.0/2.0 NW_024969969.1 448826 458119 - heat shock factor-binding protein 1 aug3.g26289 LOC107437614 2e-153
LOC107437612 Ptep1.0/2.0 NW_024969969.1 458187 481693 + geranylgeranyl transferase type-2 subunit alpha aug3.g26288 LOC107437612 0
LOC107437613 Ptep1.0/2.0 NW_024969969.1 481548 499255 - cytochrome b-c1 complex subunit Rieske, mitochondrial aug3.g26287 LOC107437613 0
LOC107437609 Ptep1.0/2.0 NW_024969969.1 511255 522030 + uncharacterized LOC107437609 aug3.g26286 LOC107437609 2e-105
LOC107437608 Ptep1.0/2.0 NW_024969969.1 542371 543684 + uncharacterized LOC107437608 aug3.g26285 LOC107437608 2e-87
LOC107437605 Ptep1.0/2.0 NW_024969969.1 545226 568844 + mRNA cap guanine-N7 methyltransferase aug3.g26285 LOC107437606,LOC107437605 0
LOC107437604 Ptep1.0/2.0 NW_024969969.1 577089 611560 + protein SMG9 aug3.g26284 LOC107437604 0
LOC110282377 Ptep1.0/2.0 NW_024969969.1 619929 631933 + retinal homeobox protein Rx-A-like aug3.g26283 LOC110282377 2e-114
LOC110281931 Ptep1.0/2.0 NW_024970045.1 113635 430441 + IQ motif and SEC7 domain-containing protein 1 aug3.g2628,aug3.g2626,aug3.g2627,aug3.g22861 LOC110281931,LOC107457505 0
LOC122270086 Ptep1.0/2.0 NW_024970045.1 355371 368158 + uncharacterized LOC122270086 aug3.g2628 NA 3e-69
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02