Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268735 Ptep1.0/2.0 NW_024969665.1 708755 711787 + uncharacterized LOC122268735 aug3.g26016,aug3.g5006,aug3.g20683,aug3.g2786,aug3.g26717,aug3.g10174,aug3.g14253,aug3.g462,aug3.g384,aug3.g18711,aug3.g14703,aug3.g24087,aug3.g27923,aug3.g4590,aug3.g1290,aug3.g410,aug3.g22180,aug3.g97,aug3.g3486,aug3.g27744,aug3.g7211,aug3.g22976 NA 0
LOC122269591 Ptep1.0/2.0 NW_024969868.1 718571 719695 - uncharacterized LOC122269591 aug3.g26711 NA 0
LOC107439183 Ptep1.0/2.0 NW_024970012.1 86795 179667 + integrin alpha-9 aug3.g26710 LOC107439183 0
LOC107439184 Ptep1.0/2.0 NW_024970012.1 200645 274071 - uncharacterized LOC107439184 aug3.g26711 LOC107439184 0
LOC107439170 Ptep1.0/2.0 NW_024970012.1 283256 297322 - ferric-chelate reductase 1-like aug3.g26712 LOC107439170 0
LOC107439185 Ptep1.0/2.0 NW_024970012.1 316049 349348 - zinc metalloproteinase nas-39 aug3.g26713,aug3.g26715 LOC107439185 0
LOC107439186 Ptep1.0/2.0 NW_024970012.1 439552 501602 - uncharacterized LOC107439186 aug3.g26716 LOC107439186 0
LOC107439188 Ptep1.0/2.0 NW_024970012.1 684254 746383 + pseudogene aug3.g26718,aug3.g18189,aug3.g11205,aug3.g19 LOC107439188 0
LOC107439189 Ptep1.0/2.0 NW_024970012.1 790263 815457 + integral membrane protein 2B aug3.g26719 LOC107439189 0
LOC107449290 Ptep1.0/2.0 NW_024970126.1 21660 28904 - uncharacterized LOC107449290 aug3.g2671 LOC107449290 0
LOC122270693 Ptep1.0/2.0 NW_024970320.1 829773 870777 + uncharacterized LOC122270693 aug3.g9818,aug3.g18193,aug3.g15566,aug3.g26714,aug3.g1097,aug3.g19330,aug3.g19261,aug3.g22403,aug3.g16329,aug3.g7403,aug3.g24358,aug3.g9152,aug3.g19188,aug3.g11063,aug3.g8790,aug3.g25600,aug3.g21923,aug3.g27165,aug3.g17253,aug3.g25298 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02