Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107442434 Ptep1.0/2.0 NW_024969605.1 3191 11885 + uncharacterized LOC107442434 aug3.g27101 LOC107442434 0
LOC107445182 Ptep1.0/2.0 NW_024969936.1 152049 152606 - uncharacterized LOC107445182 aug3.g11968,aug3.g6800,aug3.g27104,aug3.g15049,aug3.g16714,aug3.g22283,aug3.g1491,aug3.g23710,aug3.g13605,aug3.g17519,aug3.g24698,aug3.g24668 LOC107445182 0
LOC107449343 Ptep1.0/2.0 NW_024970471.1 589843 690847 + excitatory amino acid transporter aug3.g2710 LOC107449343 0
LOC107440592 Ptep1.0/2.0 NW_024970686.1 3968 26079 + uncharacterized LOC107440592 aug3.g27105 LOC107440592 0
LOC107440593 Ptep1.0/2.0 NW_024970686.1 31307 32806 + oocyte zinc finger protein XlCOF15 aug3.g27106 LOC107440593 0
LOC107440587 Ptep1.0/2.0 NW_024970686.1 40728 63849 + FAS-associated factor 2 aug3.g27107 LOC107440587 0
LOC107440595 Ptep1.0/2.0 NW_024970686.1 67111 75413 + uncharacterized LOC107440595 aug3.g27108 LOC107440595 0
LOC107440588 Ptep1.0/2.0 NW_024970686.1 76932 215058 - myelin regulatory factor-like protein aug3.g27109 LOC107440588 0
LOC122271829 Ptep1.0/2.0 NW_024971191.1 96866 112244 + uncharacterized LOC122271829 aug3.g27102 NA 0
LOC107440591 Ptep1.0/2.0 NW_024971693.1 30627 35234 - neurofibromin-like aug3.g27101,aug3.g15778 LOC107440591 0
LOC107440586 Ptep1.0/2.0 NW_024996176.1 19087 175071 + protein PALS1 aug3.g27103 LOC107440586 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02