Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268383 Ptep1.0/2.0 NW_024969637.1 82213 82635 - uncharacterized LOC122268383 aug3.g27334 LOC107441564 1e-153
LOC107441586 Ptep1.0/2.0 NW_024969637.1 89064 90340 - zinc finger protein OZF-like aug3.g27334 LOC107441586 0
LOC107441571 Ptep1.0/2.0 NW_024969637.1 92177 93511 - histone H2A type 1-D-like aug3.g27335 LOC107441571 0
LOC107441569 Ptep1.0/2.0 NW_024969637.1 104848 144783 + paired box protein Pax-1 aug3.g27336 LOC107441569 0
LOC107441576 Ptep1.0/2.0 NW_024969637.1 166686 179490 - transcription termination factor 3, mitochondrial aug3.g27337 LOC107441576 0
LOC107441577 Ptep1.0/2.0 NW_024969637.1 179661 194855 + V-type proton ATPase 21 kDa proteolipid subunit aug3.g27338 LOC107441577 0
LOC107441579 Ptep1.0/2.0 NW_024969637.1 198120 205027 - telomerase RNA component interacting RNase aug3.g27339 LOC107441579 0
LOC107449387 Ptep1.0/2.0 NW_024969680.1 748403 1294737 - semaphorin-1A aug3.g2733 LOC107449387 0
LOC107441564 Ptep1.0/2.0 NW_024969756.1 2747 10459 + DNA-directed RNA polymerases I and III subunit RPAC2 aug3.g27334 LOC107441564 0
LOC107441575 Ptep1.0/2.0 NW_024969756.1 16014 31697 - thymidylate kinase aug3.g27333 LOC107441575 0
LOC107441574 Ptep1.0/2.0 NW_024969756.1 31733 34071 + vesicular integral-membrane protein VIP36 aug3.g27332 LOC107441574 0
LOC107441572 Ptep1.0/2.0 NW_024969756.1 44988 201658 - uncharacterized LOC107441572 aug3.g27330 LOC107441572 0
LOC107439190 Ptep1.0/2.0 NW_024970055.1 212855 214604 - zinc finger protein 93-like aug3.g27334 LOC107439190 0.0000000000002
LOC107442327 Ptep1.0/2.0 NW_024970229.1 288281 289725 - gastrula zinc finger protein XlCGF7.1-like aug3.g27334 LOC107442327 0.000000000000004
LOC122271124 Ptep1.0/2.0 NW_024970583.1 34135 68673 - uncharacterized LOC122271124 aug3.g27330 LOC107441572 0
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02