Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456160 Ptep1.0/2.0 NW_024969697.1 1190291 1212760 + eukaryotic translation initiation factor 3 subunit B aug3.g340 LOC107456160 0
LOC107446466 Ptep1.0/2.0 NW_024970892.1 138547 154411 + carbonic anhydrase-like aug3.g3407,aug3.g6531 LOC107446466 0
LOC107450529 Ptep1.0/2.0 NW_024971042.1 14019 30315 + uncharacterized LOC107450529 aug3.g3402 LOC107450529 0
LOC107450525 Ptep1.0/2.0 NW_024971042.1 33885 44522 + 39S ribosomal protein L11, mitochondrial aug3.g3403,aug3.g24341 LOC107450525,LOC107443013 0
LOC107450530 Ptep1.0/2.0 NW_024971042.1 51237 87175 - heat shock protein beta-1 aug3.g3404 LOC107450530 0
LOC107450532 Ptep1.0/2.0 NW_024971042.1 105852 116817 + embryonic protein UVS.2 aug3.g3405 LOC107450532 0
LOC107450526 Ptep1.0/2.0 NW_024971042.1 148806 149522 - protein ZBED8-like aug3.g3406,aug3.g24056,aug3.g21884 LOC107450526 0
LOC107450527 Ptep1.0/2.0 NW_024971042.1 185040 202805 + putative carbonic anhydrase 3 aug3.g3408,aug3.g22012 LOC107450527 0
LOC107450528 Ptep1.0/2.0 NW_024971042.1 219266 233606 + carbonic anhydrase 2-like aug3.g3409 LOC107450528 0
LOC107450524 Ptep1.0/2.0 NW_024971410.1 3669 26098 + uncharacterized LOC107450524 aug3.g3401 LOC107450524 0
LOC122272019 Ptep1.0/2.0 NW_024971411.1 52973 68745 + uncharacterized LOC122272019 aug3.g3401 NA 0
LOC107447918 Ptep1.0/2.0 NW_024971672.1 6995 44466 + uncharacterized LOC107447918 aug3.g3401 LOC107447918 0
LOC122272686 Ptep1.0/2.0 NW_024972513.1 220 3135 + uncharacterized LOC122272686 aug3.g3408 NA 7e-63
LOC122272685 Ptep1.0/2.0 NW_024972513.1 8886 19175 + carbonic anhydrase 7-like aug3.g3408 LOC107450527 1e-85
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02