Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456154 Ptep1.0/2.0 NW_024969593.1 2091683 2129422 + poly [ADP-ribose] polymerase tankyrase-2 aug3.g357 LOC107456154 0
LOC107450741 Ptep1.0/2.0 NW_024969643.1 1267071 1297914 - homeobox protein SIX6-like aug3.g3570 LOC107450741 0
LOC122270142 Ptep1.0/2.0 NW_024970067.1 361778 362497 - uncharacterized LOC122270142 aug3.g3578 NA 0
LOC107440307 Ptep1.0/2.0 NW_024970424.1 142285 239943 - serine/threonine-protein kinase WNK1 aug3.g14430,aug3.g3579 LOC107450761,LOC107440307 0
LOC107450748 Ptep1.0/2.0 NW_024971480.1 70470 71807 - piggyBac transposable element-derived protein 4-like aug3.g3577 LOC107450748 0
LOC122272107 Ptep1.0/2.0 NW_024971504.1 11456 12905 - major centromere autoantigen B-like aug3.g3578 NA 0
LOC107436361 Ptep1.0/2.0 NW_024971545.1 22781 23929 - tigger transposable element-derived protein 6-like aug3.g3578,aug3.g24873,aug3.g2029 LOC107436361 0
LOC107451653 Ptep1.0/2.0 NW_024971578.1 35430 37502 - uncharacterized LOC107451653 aug3.g20094,aug3.g3572 LOC107451653 0
LOC122272528 Ptep1.0/2.0 NW_024972178.1 33960 34521 - uncharacterized LOC122272528 aug3.g3578 NA 0
LOC122272646 Ptep1.0/2.0 NW_024972433.1 5487 6714 + uncharacterized LOC122272646 aug3.g3574 NA 0
LOC110282440 Ptep1.0/2.0 NW_024972433.1 10065 15247 + putative leucine-rich repeat-containing protein DDB_G0290503 aug3.g3574 LOC110282440 0
LOC122268597 Ptep1.0/2.0 NW_025004201.1 8 466 - tigger transposable element-derived protein 6-like aug3.g3578 NA 1e-149
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02