Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437684 Ptep1.0/2.0 NW_024969612.1 2009173 2182623 + ADAMTS-like protein 1 aug3.g377 LOC107437684 0
LOC107437226 Ptep1.0/2.0 NW_024969612.1 2192243 2215800 - L-threonine 3-dehydrogenase aug3.g376,aug3.g377 LOC107437226 0
LOC107436355 Ptep1.0/2.0 NW_024969815.1 763066 807749 - oocyte zinc finger protein XlCOF6.1 aug3.g18966,aug3.g16370,aug3.g11139,aug3.g23931,aug3.g10099,aug3.g19028,aug3.g26680,aug3.g658,aug3.g6866,aug3.g3777,aug3.g13767,aug3.g1246,aug3.g20365,aug3.g12813,aug3.g18681,aug3.g5858,aug3.g20791,aug3.g17997,aug3.g11223,aug3.g15649,aug3.g3781,aug3.g2204 LOC107454207,LOC107436355 0
LOC107451090 Ptep1.0/2.0 NW_024970020.1 110830 120228 - uncharacterized LOC107451090 aug3.g3779 LOC107451090 1e-131
LOC107451092 Ptep1.0/2.0 NW_024970020.1 129141 140330 + uncharacterized LOC107451092 aug3.g3778 LOC107451092 0
LOC107451088 Ptep1.0/2.0 NW_024970020.1 154343 163359 + uncharacterized LOC107451088 aug3.g3777 LOC107451088 0
LOC107451097 Ptep1.0/2.0 NW_024970020.1 193542 385932 - rab3 GTPase-activating protein catalytic subunit aug3.g3773,aug3.g3776 LOC107451097 0
LOC107451099 Ptep1.0/2.0 NW_024970020.1 221881 261992 + leucine-rich repeat transmembrane protein FLRT3 aug3.g3775 LOC107451099 0
LOC107451098 Ptep1.0/2.0 NW_024970020.1 314321 360957 + uncharacterized LOC107451098 aug3.g3774 LOC107451098 0
LOC107451101 Ptep1.0/2.0 NW_024970020.1 392650 409977 - stress response protein NST1 aug3.g3772 LOC107451101 0
LOC107451100 Ptep1.0/2.0 NW_024970020.1 413494 433630 - cyclin-dependent-like kinase 5 aug3.g3771 LOC107451100 0
LOC107451096 Ptep1.0/2.0 NW_024970020.1 433993 478872 + uncharacterized LOC107451096 aug3.g3770 LOC107451096 0
LOC107436116 Ptep1.0/2.0 NW_024971356.1 20814 35826 - uncharacterized LOC107436116 aug3.g11327,aug3.g3778 LOC107436116 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02