Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107452526 Ptep1.0/2.0 NW_024969878.1 530899 577579 - glucose-6-phosphate exchanger SLC37A4 aug3.g444 LOC107452526 0
LOC107451983 Ptep1.0/2.0 NW_024970559.1 10091 79720 - zinc finger protein Xfin aug3.g4448 LOC107451983 0
LOC107451984 Ptep1.0/2.0 NW_024970559.1 79857 85965 + macrophage migration inhibitory factor homolog aug3.g4447 LOC107451984 0
LOC107451986 Ptep1.0/2.0 NW_024970559.1 88609 159482 - T-box transcription factor TBX10-like aug3.g4446 LOC107451986 0
LOC107451980 Ptep1.0/2.0 NW_024970559.1 189362 202701 - uncharacterized LOC107451980 aug3.g4445 LOC107451980 0
LOC107451978 Ptep1.0/2.0 NW_024970559.1 202472 263298 + uncharacterized LOC107451978 aug3.g4444,aug3.g4448 LOC107451978 0
LOC107451979 Ptep1.0/2.0 NW_024970559.1 267940 281520 + uncharacterized LOC107451979 aug3.g4443 LOC107451979 0
LOC107451977 Ptep1.0/2.0 NW_024970559.1 282732 314979 - uncharacterized LOC107451977 aug3.g4442 LOC107451977 0
LOC107451982 Ptep1.0/2.0 NW_024970559.1 314936 319197 + uncharacterized LOC107451982 aug3.g4441 LOC107451982 0
LOC107451991 Ptep1.0/2.0 NW_024970559.1 319894 345306 - RUS family member 1 aug3.g4440 LOC107451991 0
LOC107451988 Ptep1.0/2.0 NW_024971303.1 52673 67323 + uncharacterized LOC107451988 aug3.g4449 LOC107451988 0
LOC122271933 Ptep1.0/2.0 NW_024971303.1 81134 107304 - uncharacterized LOC122271933 aug3.g4448 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02