Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269058 Ptep1.0/2.0 NW_024969724.1 588385 592270 - uncharacterized LOC122269058 aug3.g5169 NA 0
LOC107443755 Ptep1.0/2.0 NW_024969942.1 462422 797160 - A disintegrin and metalloproteinase with thrombospondin motifs 9 aug3.g516,aug3.g517 LOC107443755 0
LOC107453041 Ptep1.0/2.0 NW_024969964.1 9198 12240 + mannose-6-phosphate isomerase aug3.g5161 LOC107453041 0
LOC107453035 Ptep1.0/2.0 NW_024969964.1 32316 123646 - zinc finger SWIM domain-containing protein 5 aug3.g5160,aug3.g18927 LOC107453035 0
LOC122270733 Ptep1.0/2.0 NW_024970336.1 2499 3494 - uncharacterized LOC122270733 aug3.g5169 NA 0
LOC122270734 Ptep1.0/2.0 NW_024970336.1 3552 4621 - uncharacterized LOC122270734 aug3.g5169 NA 0
LOC107453036 Ptep1.0/2.0 NW_024970336.1 12483 13977 + protein maternal effect lethal 26-like aug3.g5168 LOC107453036 1e-131
LOC122270735 Ptep1.0/2.0 NW_024970336.1 26847 28313 + uncharacterized LOC122270735 aug3.g5168,aug3.g24091 NA 0
LOC107453042 Ptep1.0/2.0 NW_024970336.1 46798 76155 - E3 ubiquitin-protein ligase UBR2 aug3.g5167 LOC107453042 0
LOC107453044 Ptep1.0/2.0 NW_024970336.1 82031 112517 - uncharacterized LOC107453044 aug3.g5166 LOC107453044 0
LOC107453034 Ptep1.0/2.0 NW_024970336.1 125502 230666 + protein O-mannosyl-transferase Tmtc3 aug3.g5165 LOC107453034 0
LOC107453038 Ptep1.0/2.0 NW_024970336.1 310673 311896 + speckle-type POZ protein B-like aug3.g5164 LOC107453038 0
LOC122270983 Ptep1.0/2.0 NW_024970486.1 323177 332895 + uncharacterized LOC122270983 aug3.g5163 NA 9e-152
LOC107453040 Ptep1.0/2.0 NW_024970486.1 335328 362264 - probable ATP-dependent RNA helicase vasa-like aug3.g5162 LOC107453040 0
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02