Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107453154 Ptep1.0/2.0 NW_024969711.1 1136711 1157585 - cytochrome P450 2J4 aug3.g5257,aug3.g19344,aug3.g5258 LOC107453154 0
LOC107447481 Ptep1.0/2.0 NW_024969711.1 1304117 1329529 - calsequestrin-1 aug3.g19785,aug3.g5256 LOC107447481 0
LOC107453148 Ptep1.0/2.0 NW_024969836.1 1270877 1293324 - spastin aug3.g5250 LOC107453148 0
LOC107453143 Ptep1.0/2.0 NW_024969836.1 1293520 1359043 + steroid hormone receptor ERR2 aug3.g5251 LOC107453143 0
LOC107453142 Ptep1.0/2.0 NW_024969836.1 1369559 1395188 - inositol-tetrakisphosphate 1-kinase aug3.g5252 LOC107453142 0
LOC107453145 Ptep1.0/2.0 NW_024969836.1 1395330 1420628 + transmembrane and coiled-coil domain-containing protein 4 aug3.g5253 LOC107453145 0
LOC107453151 Ptep1.0/2.0 NW_024969836.1 1435031 1450919 + inactive hydroxysteroid dehydrogenase-like protein 1 aug3.g5254 LOC107453151 0
LOC107453144 Ptep1.0/2.0 NW_024969836.1 1455570 1457987 - major heat shock 70 kDa protein Ab aug3.g5255 LOC107453144 0
LOC107443752 Ptep1.0/2.0 NW_024969942.1 1208959 1214960 - protein FMC1 homolog aug3.g525 LOC107443752 0
LOC107436593 Ptep1.0/2.0 NW_024970281.1 392223 394720 - heat shock protein 70 B2 aug3.g11686,aug3.g5255 LOC107436593 0
LOC122272743 Ptep1.0/2.0 NW_024972718.1 2559 11689 - cytochrome P450 2J6-like aug3.g5257 LOC107446726 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02