Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439940 Ptep1.0/2.0 NW_024969605.1 261912 263215 + gastrula zinc finger protein xLCGF3.1-like aug3.g5260 LOC107439940 0.0000000003
LOC107453168 Ptep1.0/2.0 NW_024969711.1 859882 870271 + phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 aug3.g5268 LOC107453168 0
LOC107453164 Ptep1.0/2.0 NW_024969711.1 879764 893787 - succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial aug3.g5267 LOC107453164 0
LOC107453158 Ptep1.0/2.0 NW_024969711.1 893949 923312 + lysophospholipase D GDPD1 aug3.g5266 LOC107453158 0
LOC107453160 Ptep1.0/2.0 NW_024969711.1 941558 979486 + A-kinase anchor protein 1, mitochondrial aug3.g5265 LOC107453160 0
LOC107453155 Ptep1.0/2.0 NW_024969711.1 983048 989830 + uncharacterized LOC107453155 aug3.g5264,aug3.g22138 LOC107453155 0
LOC107453161 Ptep1.0/2.0 NW_024969711.1 994919 1033270 - RNA-binding protein 5 aug3.g5263 LOC107453161 0
LOC107453162 Ptep1.0/2.0 NW_024969711.1 1033369 1055447 + histone H4 transcription factor aug3.g5262 LOC107453162 0
LOC107453163 Ptep1.0/2.0 NW_024969711.1 1070072 1105803 + PR domain zinc finger protein 10 aug3.g5261 LOC107453163 0
LOC107453166 Ptep1.0/2.0 NW_024969711.1 1111229 1123147 - omega-amidase NIT2 aug3.g5260 LOC107453166 7e-175
LOC107453165 Ptep1.0/2.0 NW_024969711.1 1123374 1127447 + gastrula zinc finger protein XlCGF26.1 aug3.g5260 LOC107453165 2e-37
LOC110283086 Ptep1.0/2.0 NW_024969781.1 1390038 1403178 + zinc finger protein 91 aug3.g5260 LOC110283086 0.000000000002
LOC107443762 Ptep1.0/2.0 NW_024969942.1 1221766 1241935 - dual specificity protein phosphatase 7 aug3.g526 LOC107443762 0
LOC107442710 Ptep1.0/2.0 NW_024971000.1 53212 88640 + BTB/POZ and MATH domain-containing protein 3-like aug3.g16769,aug3.g16771,aug3.g5263 LOC107442710 0
LOC107452969 Ptep1.0/2.0 NW_024971036.1 66656 68964 - zinc finger protein 525-like aug3.g5260 LOC107452969 0.0000002
LOC122273849 Ptep1.0/2.0 NW_024981617.1 29 1588 - gastrula zinc finger protein XlCGF8.2DB-like aug3.g5260 NA 7e-38
LOC122273848 Ptep1.0/2.0 NW_024981617.1 1665 2013 - gastrula zinc finger protein XlCGF49.1-like aug3.g5260 NA 3e-35
17 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02