Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107443803 Ptep1.0/2.0 NW_024969749.1 1114210 1138016 - ascorbate transporter, chloroplastic aug3.g539 LOC107443803 0
LOC122269552 Ptep1.0/2.0 NW_024969861.1 324489 326227 + uncharacterized LOC122269552 aug3.g5399 NA 0
LOC107453307 Ptep1.0/2.0 NW_024969861.1 326242 435596 + dynein axonemal heavy chain 3 aug3.g5399,aug3.g24308,aug3.g22434 LOC107442744,LOC107453307,LOC110282831 0
LOC107453306 Ptep1.0/2.0 NW_024969861.1 440326 461709 + uncharacterized LOC107453306 aug3.g5398 LOC107453306 0
LOC107453315 Ptep1.0/2.0 NW_024969861.1 463034 502333 - extracellular serine/threonine protein CG31145 aug3.g5397,aug3.g20965,aug3.g23420 LOC107453315,LOC107440701 0
LOC107453305 Ptep1.0/2.0 NW_024969861.1 516067 586632 - putative ammonium transporter 3 aug3.g5394,aug3.g5396 LOC107453305 0
LOC107453310 Ptep1.0/2.0 NW_024969861.1 621042 632483 - uncharacterized LOC107453310 aug3.g5393 LOC107453310 0
LOC107453312 Ptep1.0/2.0 NW_024969861.1 632591 655252 + SNARE-associated protein Snapin aug3.g5392 LOC107453312 0
LOC107453309 Ptep1.0/2.0 NW_024969861.1 632770 645008 + uncharacterized LOC107453309 aug3.g5392 LOC107453309 0
LOC107453313 Ptep1.0/2.0 NW_024969861.1 659544 689669 - protein naked cuticle homolog 1 aug3.g5391 LOC107453313 0
LOC107453314 Ptep1.0/2.0 NW_024969861.1 738809 746687 + uncharacterized LOC107453314 aug3.g5390 LOC107453314 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02