Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444179 Ptep1.0/2.0 NW_024969828.1 492985 507745 + uncharacterized LOC107444179 aug3.g644 LOC107444179 0
LOC107444424 Ptep1.0/2.0 NW_024969834.1 292268 293181 + uncharacterized LOC107444424 aug3.g11589,aug3.g6444,aug3.g23739,aug3.g17869,aug3.g15569,aug3.g21698,aug3.g21456 LOC107444424 0
LOC122269500 Ptep1.0/2.0 NW_024969843.1 312342 313232 - tigger transposable element-derived protein 6-like aug3.g2479,aug3.g3909,aug3.g6442 NA 0
LOC107454667 Ptep1.0/2.0 NW_024970299.1 159801 169621 + malate dehydrogenase, mitochondrial aug3.g6440 LOC107454667 0
LOC107454666 Ptep1.0/2.0 NW_024970299.1 169906 196042 - serine/threonine-protein kinase NLK aug3.g6441 LOC107454666 0
LOC122270650 Ptep1.0/2.0 NW_024970299.1 275445 275924 + uncharacterized LOC122270650 aug3.g6442 NA 0
LOC107454677 Ptep1.0/2.0 NW_024970472.1 3007 3600 - uncharacterized LOC107454677 aug3.g6449,aug3.g12148 LOC107454677 0
LOC107454682 Ptep1.0/2.0 NW_024970472.1 142477 334180 - neurotrimin aug3.g6448 LOC107454682 0
LOC110282236 Ptep1.0/2.0 NW_024970472.1 383957 389427 - uncharacterized LOC110282236 aug3.g6447 LOC110282236 1e-133
LOC122271679 Ptep1.0/2.0 NW_024971048.1 158559 159947 + THAP domain-containing protein 1-like aug3.g6445 NA 3e-148
LOC107452427 Ptep1.0/2.0 NW_024971646.1 51993 54639 + uncharacterized LOC107452427 aug3.g12147,aug3.g890,aug3.g27780,aug3.g536,aug3.g3617,aug3.g537,aug3.g6449,aug3.g7108 LOC107452427 0
LOC122272981 Ptep1.0/2.0 NW_024973580.1 623 1384 - uncharacterized LOC122272981 aug3.g6444 NA 0
LOC122272980 Ptep1.0/2.0 NW_024973580.1 5015 5955 + THAP domain-containing protein 1-like aug3.g6445 NA 7e-152
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02