Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107455121 Ptep1.0/2.0 NW_024969752.1 5130489 5263483 + tyrosine-protein phosphatase 99A aug3.g6819,aug3.g6820 LOC107455121 0
LOC107455124 Ptep1.0/2.0 NW_024969752.1 5287105 5325256 + chitin deacetylase 1 aug3.g6820 LOC110282196,LOC107455124 0
LOC107455115 Ptep1.0/2.0 NW_024969752.1 5326976 5365369 - ADAM 17-like protease aug3.g6821 LOC107455115 0
LOC107455123 Ptep1.0/2.0 NW_024969752.1 5365496 5380876 + eukaryotic translation initiation factor 4H aug3.g6822 LOC107455123 0
LOC107455120 Ptep1.0/2.0 NW_024969752.1 5394996 5408089 - charged multivesicular body protein 3 aug3.g6823 LOC107455120 0
LOC107455119 Ptep1.0/2.0 NW_024969752.1 5419130 5522989 + glycerol-3-phosphate acyltransferase 1, mitochondrial aug3.g6824 LOC107455119 0
LOC122269164 Ptep1.0/2.0 NW_024969752.1 5806421 5823517 - uncharacterized LOC122269164 aug3.g6829 NA 0
LOC122270560 Ptep1.0/2.0 NW_024970244.1 338870 350726 - uncharacterized LOC122270560 aug3.g555,aug3.g27021,aug3.g3303,aug3.g24086,aug3.g25561,aug3.g25737,aug3.g11378,aug3.g26737,aug3.g23862,aug3.g13207,aug3.g25176,aug3.g23432,aug3.g27815,aug3.g4200,aug3.g26053,aug3.g25031,aug3.g24630,aug3.g22423,aug3.g17890,aug3.g15308,aug3.g6826,aug3.g22 NA 0
LOC107444336 Ptep1.0/2.0 NW_024970581.1 117601 153701 - uncharacterized LOC107444336 aug3.g682 LOC107444336 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02