Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268757 Ptep1.0/2.0 NW_024969670.1 694403 694888 - piggyBac transposable element-derived protein 1-like aug3.g6869 NA 7e-43
LOC107440110 Ptep1.0/2.0 NW_024969675.1 737933 764627 - 40-kDa huntingtin-associated protein aug3.g14271,aug3.g9818,aug3.g14231,aug3.g12670,aug3.g7979,aug3.g20627,aug3.g14384,aug3.g1350,aug3.g27662,aug3.g8721,aug3.g20462,aug3.g23430,aug3.g7037,aug3.g26629,aug3.g5368,aug3.g8439,aug3.g9624,aug3.g7249,aug3.g5894,aug3.g15802,aug3.g6860,aug3.g2105,aug LOC107440110 0
LOC107436355 Ptep1.0/2.0 NW_024969815.1 763066 807749 - oocyte zinc finger protein XlCOF6.1 aug3.g18966,aug3.g16370,aug3.g11139,aug3.g23931,aug3.g10099,aug3.g19028,aug3.g26680,aug3.g658,aug3.g6866,aug3.g3777,aug3.g13767,aug3.g1246,aug3.g20365,aug3.g12813,aug3.g18681,aug3.g5858,aug3.g20791,aug3.g17997,aug3.g11223,aug3.g15649,aug3.g3781,aug3.g2204 LOC107454207,LOC107436355 0
LOC107441952 Ptep1.0/2.0 NW_024969923.1 241023 574779 - SAM and SH3 domain-containing protein 1 aug3.g16287,aug3.g6864 LOC107441952 0
LOC107455153 Ptep1.0/2.0 NW_024970040.1 317337 655958 + protein trachealess aug3.g6868 LOC107455153 0
LOC107455150 Ptep1.0/2.0 NW_024970040.1 665606 720779 - DNA repair protein RAD50 aug3.g6867 LOC107455150 0
LOC107444333 Ptep1.0/2.0 NW_024970581.1 10086 73444 - probable ATP-dependent DNA helicase HFM1 aug3.g686 LOC107444333 0
LOC107455149 Ptep1.0/2.0 NW_024971425.1 1218 31374 - DNA repair protein RAD50-like aug3.g6866,aug3.g6867 LOC107455149 0
LOC110283150 Ptep1.0/2.0 NW_024971425.1 51939 55009 - pseudogene aug3.g6865 LOC110283150 0
LOC122268520 Ptep1.0/2.0 NW_024998041.1 744 1190 - protein trachealess-like aug3.g6868 NA 6e-151
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02