Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268735 Ptep1.0/2.0 NW_024969665.1 708755 711787 + uncharacterized LOC122268735 aug3.g26016,aug3.g5006,aug3.g20683,aug3.g2786,aug3.g26717,aug3.g10174,aug3.g14253,aug3.g462,aug3.g384,aug3.g18711,aug3.g14703,aug3.g24087,aug3.g27923,aug3.g4590,aug3.g1290,aug3.g410,aug3.g22180,aug3.g97,aug3.g3486,aug3.g27744,aug3.g7211,aug3.g22976 NA 0
LOC107444440 Ptep1.0/2.0 NW_024969666.1 658445 692668 + alkyldihydroxyacetonephosphate synthase, peroxisomal aug3.g721 LOC107444440 0
LOC122268901 Ptep1.0/2.0 NW_024969700.1 314166 314609 + uncharacterized LOC122268901 aug3.g7211 NA 3e-180
LOC122270567 Ptep1.0/2.0 NW_024970246.1 68404 98991 + relaxin receptor 1-like aug3.g7210 NA 0
LOC107450956 Ptep1.0/2.0 NW_024970246.1 106041 109181 - titin-like aug3.g21366,aug3.g7212 LOC107450956 0
LOC107440961 Ptep1.0/2.0 NW_024970246.1 120929 131652 + uncharacterized LOC107440961 aug3.g7213 LOC107440961 1e-31
LOC107440955 Ptep1.0/2.0 NW_024970246.1 137044 145769 + relaxin receptor 2-like aug3.g7213 LOC107440955 0
LOC107440956 Ptep1.0/2.0 NW_024970246.1 207222 265856 + clavesin-2 aug3.g7214 LOC107440956 0
LOC107440947 Ptep1.0/2.0 NW_024970246.1 269548 307986 + alpha-tocopherol transfer protein-like aug3.g7215 LOC107440947 0
LOC107440949 Ptep1.0/2.0 NW_024970246.1 363584 413217 + clavesin-2-like aug3.g7216 LOC107440949 0
LOC107450122 Ptep1.0/2.0 NW_024970246.1 431617 453986 - pancreatic triacylglycerol lipase-like aug3.g21073,aug3.g7217 LOC107450122 0
LOC107440959 Ptep1.0/2.0 NW_024970758.1 14625 33715 + uncharacterized LOC107440959 aug3.g7219 LOC107440959 0
LOC122272325 Ptep1.0/2.0 NW_024971792.1 53096 53718 + probable RNA-binding protein 46 aug3.g7219 LOC107440959 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02