Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444557 Ptep1.0/2.0 NW_024969661.1 869460 909528 + serine/threonine-protein kinase 31 aug3.g746 LOC107444557 0
LOC122268324 Ptep1.0/2.0 NW_024969661.1 911676 918551 + serine/threonine-protein kinase 31-like aug3.g746 LOC107444557 0
LOC107444534 Ptep1.0/2.0 NW_024969856.1 36626 438223 + uncharacterized LOC107444534 aug3.g7460 LOC107444534,LOC107444541 0
LOC107445030 Ptep1.0/2.0 NW_024970408.1 136091 199766 + nephrin aug3.g7466,aug3.g24752 LOC107445030 0
LOC107445044 Ptep1.0/2.0 NW_024970408.1 201903 227270 - leucine-rich repeat neuronal protein 1 aug3.g7467 LOC107445044 0
LOC107445057 Ptep1.0/2.0 NW_024970408.1 232108 247185 - zinc finger protein OZF aug3.g7468 LOC107445057 0
LOC107445056 Ptep1.0/2.0 NW_024970408.1 247328 263744 + equilibrative nucleoside transporter 3 aug3.g7469 LOC107445056 0
LOC122271924 Ptep1.0/2.0 NW_024971294.1 4720 27525 - uncharacterized LOC122271924 aug3.g7464 NA 0
LOC107444542 Ptep1.0/2.0 NW_024971294.1 14506 34912 + uncharacterized LOC107444542 aug3.g7463 LOC107444542 0
LOC107444539 Ptep1.0/2.0 NW_024971294.1 37707 67380 + protein shisa-5 aug3.g7462 LOC107444539 0
LOC122271925 Ptep1.0/2.0 NW_024971294.1 70003 83593 + uncharacterized LOC122271925 aug3.g7462 NA 1e-151
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02