Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122269221 Ptep1.0/2.0 NW_024969764.1 8819 14777 + uncharacterized LOC122269221 aug3.g24018,aug3.g7943 NA 0
LOC107452345 Ptep1.0/2.0 NW_024969904.1 521475 523445 - uncharacterized LOC107452345 aug3.g21713,aug3.g7948 LOC107452345 0
LOC122269826 Ptep1.0/2.0 NW_024969946.1 180414 186085 + uncharacterized LOC122269826 aug3.g7941,aug3.g19927 NA 0
LOC107455675 Ptep1.0/2.0 NW_024970189.1 319697 321055 - uncharacterized LOC107455675 aug3.g7940,aug3.g17859 LOC107455675 0
LOC107436667 Ptep1.0/2.0 NW_024970223.1 102 956 + ATP-dependent DNA helicase PIF2-like aug3.g11752,aug3.g15976,aug3.g7940 LOC107436667 0
LOC107444665 Ptep1.0/2.0 NW_024970315.1 268279 295533 + nuclear receptor subfamily 2 group E member 1 aug3.g794 LOC107444665 0
LOC107438357 Ptep1.0/2.0 NW_024971104.1 46076 101097 - neurogenic locus Notch protein aug3.g14783,aug3.g18905,aug3.g18222,aug3.g7947 LOC107438357,LOC107444966,LOC107440730 0
LOC122272153 Ptep1.0/2.0 NW_024971567.1 55024 56744 - signaling mucin HKR1-like aug3.g7949 NA 0
LOC107455682 Ptep1.0/2.0 NW_024972304.1 1183 18642 + neurogenic locus Notch protein aug3.g7947 LOC107455682 0
LOC107446176 Ptep1.0/2.0 NW_024972346.1 19974 25131 + uncharacterized LOC107446176 aug3.g18982,aug3.g16944,aug3.g7941 LOC107446176 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02