Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444744 Ptep1.0/2.0 NW_024969596.1 1108746 1179192 - transcription factor SOX-8 aug3.g816 LOC107444744 0
LOC107455936 Ptep1.0/2.0 NW_024969746.1 1588789 1627544 + histone-lysine N-methyltransferase SETD2 aug3.g8161,aug3.g17463 LOC107455936 0
LOC107455942 Ptep1.0/2.0 NW_024969746.1 1633820 1652846 + dnaJ homolog subfamily B member 1 aug3.g8162 LOC107455942 0
LOC107455934 Ptep1.0/2.0 NW_024969746.1 1656366 1688853 - TATA box-binding protein-associated factor RNA polymerase I subunit B aug3.g8163 LOC107455934 0
LOC107455935 Ptep1.0/2.0 NW_024969746.1 1688915 1702798 + COP9 signalosome complex subunit 6 aug3.g8164 LOC107455935 0
LOC107455932 Ptep1.0/2.0 NW_024969746.1 1720899 1804637 + myosin-11-like aug3.g8165 LOC107455932 0
LOC107455933 Ptep1.0/2.0 NW_024969746.1 1812114 1835082 - uncharacterized LOC107455933 aug3.g8166 LOC107455933 0
LOC107455943 Ptep1.0/2.0 NW_024969746.1 1840232 1844856 - histone-lysine N-methyltransferase SETMAR aug3.g8167 LOC107455943 0
LOC107455938 Ptep1.0/2.0 NW_024969746.1 1845833 1850905 + dnaJ homolog subfamily B member 9 aug3.g8168 LOC107455938 0
LOC107455939 Ptep1.0/2.0 NW_024969746.1 1853994 1860766 - retinitis pigmentosa 9 protein aug3.g8169 LOC107455939 0
LOC107455926 Ptep1.0/2.0 NW_024970042.1 388356 410479 + atrial natriuretic peptide-converting enzyme aug3.g8160,aug3.g19105 LOC107455926 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02