Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456638 Ptep1.0/2.0 NW_024969616.1 301259 310949 + GPN-loop GTPase 1 aug3.g8710 LOC107456638 0
LOC107456630 Ptep1.0/2.0 NW_024969616.1 312148 353382 - intracellular protein transport protein USO1 aug3.g8711 LOC107456630 0
LOC107456634 Ptep1.0/2.0 NW_024969616.1 359408 401655 + RNA polymerase-associated protein CTR9 homolog aug3.g8712,aug3.g23794 LOC107456634 0
LOC107456635 Ptep1.0/2.0 NW_024969616.1 478867 643775 - uncharacterized LOC107456635 aug3.g8713 LOC107456635 0
LOC122269855 Ptep1.0/2.0 NW_024969955.1 737883 741169 - uncharacterized LOC122269855 aug3.g8715 NA 2e-127
LOC122269939 Ptep1.0/2.0 NW_024969988.1 544608 549631 - uncharacterized LOC122269939 aug3.g8714 NA 7e-155
LOC122269959 Ptep1.0/2.0 NW_024969994.1 69740 71510 - pseudogene aug3.g8714 NA 0
LOC107456643 Ptep1.0/2.0 NW_024970412.1 8403 59113 - monoglyceride lipase aug3.g8716 LOC107456643 0
LOC107456644 Ptep1.0/2.0 NW_024970412.1 59091 80608 + uncharacterized LOC107456644 aug3.g8717 LOC107456644 1e-142
LOC107456641 Ptep1.0/2.0 NW_024970412.1 76334 134602 - glutamate receptor-interacting protein 1 aug3.g8717 LOC107456641 0
LOC107456647 Ptep1.0/2.0 NW_024970412.1 143576 177719 + fatty acyl-CoA reductase 1 aug3.g8718 LOC107456647 0
LOC122270854 Ptep1.0/2.0 NW_024970412.1 187881 230145 + ectopic P granules protein 5 homolog aug3.g8719 LOC107456645 0
LOC107456645 Ptep1.0/2.0 NW_024970412.1 234895 359413 + ectopic P granules protein 5 homolog aug3.g8719 LOC107456645 0
LOC107444940 Ptep1.0/2.0 NW_024970418.1 525756 607553 + glutamine synthetase aug3.g871 LOC107444940 0
LOC107451890 Ptep1.0/2.0 NW_024970561.1 291400 298627 + uncharacterized LOC107451890 aug3.g8714 LOC107451890 1e-79
LOC122271125 Ptep1.0/2.0 NW_024970584.1 24964 26084 + uncharacterized LOC122271125 aug3.g8714 NA 0
LOC107456640 Ptep1.0/2.0 NW_024972199.1 7202 27221 - rho-related BTB domain-containing protein 1 aug3.g8714 LOC107456640 0
LOC110282482 Ptep1.0/2.0 NW_024972199.1 11530 12588 - uncharacterized LOC110282482 aug3.g8714 LOC110282482 0
18 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02