Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107456685 Ptep1.0/2.0 NW_024969663.1 509095 542514 + F-box DNA helicase 1 aug3.g8764 LOC107456685 0
LOC107456679 Ptep1.0/2.0 NW_024969663.1 552999 564907 + uncharacterized LOC107456679 aug3.g8763 LOC107456679 0
LOC107456681 Ptep1.0/2.0 NW_024969663.1 571979 579666 - uncharacterized LOC107456681 aug3.g8762 LOC107456681 0
LOC107456680 Ptep1.0/2.0 NW_024969663.1 588567 600496 + tubulin beta chain aug3.g8761 LOC107456680 0
LOC107456687 Ptep1.0/2.0 NW_024969663.1 607085 619479 - PIN2/TERF1-interacting telomerase inhibitor 1 aug3.g8760 LOC107456687 0
LOC107456694 Ptep1.0/2.0 NW_024969778.1 614775 659610 - ADP-ribosylation factor-like protein 5B aug3.g8766 LOC107456694 0
LOC107456693 Ptep1.0/2.0 NW_024969778.1 663975 665357 + cuticle protein 10.9-like aug3.g8767 LOC107456693 0
LOC107456689 Ptep1.0/2.0 NW_024969778.1 676977 677744 + cuticle protein 10.9-like aug3.g8768 LOC107456689 0
LOC122269258 Ptep1.0/2.0 NW_024969778.1 697535 697915 - cuticle protein 10.9-like aug3.g8769 NA 3e-140
LOC107444945 Ptep1.0/2.0 NW_024970418.1 485359 491600 - heat shock protein 83 aug3.g876 LOC107444945 0
LOC107456677 Ptep1.0/2.0 NW_024971572.1 11823 60678 - uncharacterized LOC107456677 aug3.g8765 LOC110282048,LOC107456678,LOC107456677 0
LOC122272155 Ptep1.0/2.0 NW_024971572.1 60747 71332 + F-box DNA helicase 1-like aug3.g8764 LOC107456685 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02