Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107443862 Ptep1.0/2.0 NW_024969870.1 179441 187233 + translin aug3.g9229 LOC107443862 0
LOC107443782 Ptep1.0/2.0 NW_024969870.1 193304 215510 - potassium channel subfamily K member 6 aug3.g9228,aug3.g21244 LOC107450598,LOC107443782 0
LOC107443702 Ptep1.0/2.0 NW_024969870.1 230769 242807 + leucine-rich repeat-containing protein 57 aug3.g9227 LOC107443702 0
LOC107443618 Ptep1.0/2.0 NW_024969870.1 252432 253633 - cyclin-dependent kinase 2 aug3.g9226 LOC107443618 0
LOC107443214 Ptep1.0/2.0 NW_024969870.1 262323 279129 + kelch-like protein 10 aug3.g9225 LOC107443214 0
LOC107443304 Ptep1.0/2.0 NW_024969870.1 283114 292987 - uncharacterized LOC107443304 aug3.g9224 LOC107443304 0
LOC107443535 Ptep1.0/2.0 NW_024969870.1 303325 314389 + uncharacterized LOC107443535 aug3.g9223,aug3.g6872 LOC107443535 0
LOC107443478 Ptep1.0/2.0 NW_024969870.1 323542 370059 - GATOR complex protein MIOS-B aug3.g9222,aug3.g22892 LOC107436280,LOC107443478 0
LOC107443386 Ptep1.0/2.0 NW_024969870.1 373600 383545 + 39S ribosomal protein L12, mitochondrial aug3.g9221 LOC107443386 0
LOC107445112 Ptep1.0/2.0 NW_024970731.1 138126 201694 + ras-specific guanine nucleotide-releasing factor RalGPS1 aug3.g922 LOC107445112 0
LOC122272871 Ptep1.0/2.0 NW_024973142.1 469 12988 + kelch-like protein 17 aug3.g9225 NA 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02