Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107441084 Ptep1.0/2.0 NW_024969675.1 143417 263212 + low-density lipoprotein receptor-related protein 2 aug3.g9796 LOC107441084 0
LOC107441036 Ptep1.0/2.0 NW_024969675.1 265107 279147 - uncharacterized LOC107441036 aug3.g9795 LOC107441036 0
LOC107441065 Ptep1.0/2.0 NW_024969675.1 284029 337492 - uncharacterized LOC107441065 aug3.g9794 LOC107441065 0
LOC107441054 Ptep1.0/2.0 NW_024969675.1 353052 358612 + ADP-ribosylation factor-like protein 4C aug3.g9792 LOC107441054 0
LOC107445715 Ptep1.0/2.0 NW_024969772.1 1183782 1184510 - tetraspanin-6-like aug3.g9799,aug3.g10148 LOC107445715 0
LOC107445245 Ptep1.0/2.0 NW_024969780.1 335296 339812 - uncharacterized LOC107445245 aug3.g979 LOC107445245 0
LOC107443765 Ptep1.0/2.0 NW_024970269.1 590226 592450 + tigger transposable element-derived protein 4-like aug3.g9790 LOC107443765 0
LOC122271603 Ptep1.0/2.0 NW_024970973.1 5901 6992 + tigger transposable element-derived protein 4-like aug3.g9790 NA 0
LOC107438227 Ptep1.0/2.0 NW_024971017.1 2646 35159 - pseudogene aug3.g9797,aug3.g23231 LOC107443923,LOC107438227 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02