GeneID (LOC) lists from Single Cell/Nucleus RNA sequencing
Single Nucleus RNA sequencing: stage 5 late (st5l)
cluster 0
cluster 1
cluster 2
cluster 3
cluster 4 (cMES)
cluster 5
cluster 6 (Ex)
cluster 7 (pMES)
cluster 8
cluster 9
cluster 10
cluster 11 (Endoderm)
cluster 12 (Endoderm)
cluster 13 (CM)
all patterned ect genes (264 genes)
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Single Nucleus RNA sequencing: stage 7 (st7)
cluster 0
cluster 1
cluster 2
cluster 3
cluster 4
cluster 5
cluster 6
cluster 7
cluster 8
cluster 9
cluster 10
cluster 11 (Mesoderm)
cluster 12 (Endoderm)
cluster 13
cluster 14
cluster 15
cluster 16 (Mesoderm)
cluster 17
cluster 18 (Mesoderm)
cluster 19 (Ex)
cluster 20
cluster 21
cluster 22 (Mesoderm)
cluster 23
cluster 24
cluster 25
cluster 26
all patterned ect genes (213 genes)
Reference
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
3) The raw and processed data are available at GEO under accession numbers GSE287446 and GSE201705.
Last updated by hiroki oda, 2025.5.20