Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Click here to see NEW DATA from single-nuc RNAseq of late stage 5 & stage 7
Gene/Transcript Records
NCBI geneID (-> UMAP)stage 5lstage 7stage 5lstage 7Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107448268 Ptep1.0/2.0 NW_024969593.1 3578 13589 + uncharacterized LOC107448268 aug3.g2160 LOC107448268 0
LOC107448263 Ptep1.0/2.0 NW_024969593.1 16239 50367 + xaa-Pro aminopeptidase 1 aug3.g2161 LOC107448263 0
LOC107448272 Ptep1.0/2.0 NW_024969593.1 54974 91541 + CREB3 regulatory factor aug3.g2162 LOC107448272 0
LOC107448267 Ptep1.0/2.0 NW_024969593.1 100972 105474 + speckle-type POZ protein-like B aug3.g2163 LOC107448267 0
LOC122271288 Ptep1.0/2.0 NW_024969593.1 110413 112241 + uncharacterized LOC122271288 aug3.g2164 LOC107448264 0

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Reference
1) Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis. Front. Cell Dev. Biol. 10:933220.
2) Takanori Akaiwa, Hiroki Oda, Yasuko Akiyama-Oda (2025) Genome-wide quantitative dissection of an arthropod segmented body plan at single-cell resolution Communications Biology 8:913.
3) The raw and processed data are available at GEO under accession numbers GSE287446 and GSE201705.

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Last updated by hiroki oda, 2025.5.7