Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268871 Ptep1.0/2.0 NW_024969695.1 1634691 1641167 - uncharacterized LOC122268871 aug3.g10037 NA 3e-55
LOC107444300 Ptep1.0/2.0 NW_024969695.1 1665334 1667592 - origin recognition complex subunit 5 aug3.g10038 LOC107444300 0
LOC107444282 Ptep1.0/2.0 NW_024969695.1 1668311 1701518 + 28S ribosomal protein S29, mitochondrial aug3.g10039,aug3.g24537 LOC107444282 0
LOC110283241 Ptep1.0/2.0 NW_024969864.1 939920 946355 + uncharacterized LOC110283241 aug3.g26981,aug3.g1003,aug3.g18796 LOC110283241 0
LOC107444248 Ptep1.0/2.0 NW_024970396.1 84074 266771 - polycomb group protein Psc aug3.g10036 LOC107444248 0
LOC107452456 Ptep1.0/2.0 NW_024970475.1 327327 338133 + gastrula zinc finger protein XlCGF7.1 aug3.g10035,aug3.g22962,aug3.g21471,aug3.g17555,aug3.g27741,aug3.g23456,aug3.g5478,aug3.g16507,aug3.g14632,aug3.g15597 LOC107452456 0
LOC107444233 Ptep1.0/2.0 NW_024970845.1 26745 70088 + cubilin aug3.g10034 LOC107444233 0
LOC107444224 Ptep1.0/2.0 NW_024970845.1 73584 85953 - uncharacterized LOC107444224 aug3.g10033 LOC107444224 0
LOC107444193 Ptep1.0/2.0 NW_024970845.1 89433 125102 + phosphoenolpyruvate carboxykinase, cytosolic [GTP] aug3.g10032,aug3.g22340 LOC107444193 0
LOC107444205 Ptep1.0/2.0 NW_024970845.1 126386 174898 - nucleoside diphosphate-linked moiety X motif 19 aug3.g10031 LOC107444205 0
LOC107444158 Ptep1.0/2.0 NW_024970845.1 187431 192322 + uncharacterized LOC107444158 aug3.g10030 LOC107444158 0
LOC107444226 Ptep1.0/2.0 NW_024975155.1 1066 6087 + uncharacterized LOC107444226 aug3.g10037 LOC107444226 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02