Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107444292 Ptep1.0/2.0 NW_024969695.1 1701537 1790512 - 3-hydroxy-3-methylglutaryl-coenzyme A reductase aug3.g10040,aug3.g10041 LOC107444292 0
LOC107444310 Ptep1.0/2.0 NW_024969695.1 1851580 1867621 + facilitated trehalose transporter Tret1 aug3.g10043 LOC107444310 0
LOC107444466 Ptep1.0/2.0 NW_024969901.1 1238198 1246057 - uncharacterized LOC107444466 aug3.g10049 LOC107444466 0
LOC107436252 Ptep1.0/2.0 NW_024970121.1 126360 132187 + tigger transposable element-derived protein 6 aug3.g8728,aug3.g1660,aug3.g1004 LOC107436252 0
LOC107453534 Ptep1.0/2.0 NW_024970212.1 193517 331123 - Down syndrome cell adhesion molecule aug3.g5556,aug3.g10045 LOC107453534 0
LOC107444441 Ptep1.0/2.0 NW_024970444.1 403 27840 + 85/88 kDa calcium-independent phospholipase A2 aug3.g10047 LOC107444441 0
LOC107444429 Ptep1.0/2.0 NW_024970444.1 61394 103305 - mismatch repair endonuclease PMS2 aug3.g10046,aug3.g26929 LOC107439955,LOC107444429 0
LOC107444456 Ptep1.0/2.0 NW_024970814.1 199123 219057 - transitional endoplasmic reticulum ATPase aug3.g10048 LOC107444456 0
LOC122271442 Ptep1.0/2.0 NW_024970814.1 219089 221783 + uncharacterized LOC122271442 aug3.g10047 LOC107444441 7e-158
LOC107445324 Ptep1.0/2.0 NW_024970995.1 17436 68231 - neutral alpha-glucosidase AB aug3.g1004 LOC107445324 0
LOC122271935 Ptep1.0/2.0 NW_024971305.1 8021 25528 + Down syndrome cell adhesion molecule homolog aug3.g10045 LOC107444320 0
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02