Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445649 Ptep1.0/2.0 NW_024969752.1 4816945 4959249 + protein Wnt-1 aug3.g10139,aug3.g10138 LOC107445649 0
LOC107445365 Ptep1.0/2.0 NW_024969890.1 798923 805702 + basic form of pathogenesis-related protein 1 aug3.g1013 LOC107445365 0
LOC107445595 Ptep1.0/2.0 NW_024970063.1 88879 116459 + mediator of DNA damage checkpoint protein 1 aug3.g10135 LOC107445586,LOC107445595 0
LOC107445611 Ptep1.0/2.0 NW_024970063.1 125099 134675 - uncharacterized LOC107445611 aug3.g10134,aug3.g20962,aug3.g22992 LOC107445611 0
LOC107449832 Ptep1.0/2.0 NW_024970063.1 139648 155326 - uncharacterized LOC107449832 aug3.g20962,aug3.g10133 LOC107449832 0
LOC107445413 Ptep1.0/2.0 NW_024971089.1 139519 159705 + uncharacterized LOC107445413 aug3.g10131,aug3.g15805 LOC107445413 0
LOC107449080 Ptep1.0/2.0 NW_024971839.1 8794 44999 - uncharacterized LOC107449080 aug3.g10132 LOC107449080 2e-130
LOC122272358 Ptep1.0/2.0 NW_024971854.1 4592 6178 - uncharacterized LOC122272358 aug3.g10132 NA 1e-98
LOC122272357 Ptep1.0/2.0 NW_024971854.1 16805 21633 - uncharacterized LOC122272357 aug3.g10132 NA 2e-35
LOC107445578 Ptep1.0/2.0 NW_024971854.1 24039 26660 - uncharacterized LOC107445578 aug3.g10132 LOC107445578 3e-46
LOC122272864 Ptep1.0/2.0 NW_024973109.1 10038 12445 + uncharacterized LOC122272864 aug3.g10132 NA 3e-72
LOC122268539 Ptep1.0/2.0 NW_025000280.1 524 957 - uncharacterized LOC122268539 aug3.g10132 NA 1e-88
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02