Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107450070 Ptep1.0/2.0 NW_024969696.1 996170 1023200 + steroid transmembrane transporter SLC22A24-like aug3.g1046,aug3.g21058 LOC107450070 0
LOC107445399 Ptep1.0/2.0 NW_024969696.1 1025406 1042920 + organic cation transporter 1-like aug3.g1046 LOC107445399 0
LOC122269079 Ptep1.0/2.0 NW_024969731.1 697696 755328 - uncharacterized LOC122269079 aug3.g10938,aug3.g26216,aug3.g2968,aug3.g9411,aug3.g10468 NA 0
LOC107449734 Ptep1.0/2.0 NW_024969810.1 323668 331955 + uncharacterized LOC107449734 aug3.g10469 LOC107449734 0
LOC122270933 Ptep1.0/2.0 NW_024970459.1 116921 118803 - uncharacterized LOC122270933 aug3.g15060,aug3.g10465 NA 0
LOC107449662 Ptep1.0/2.0 NW_024970623.1 39548 54052 + cell division cycle protein 123 homolog aug3.g10460 LOC107449662 0
LOC107449667 Ptep1.0/2.0 NW_024970623.1 57574 89313 - centromere-associated protein E aug3.g10461 LOC107449667 0
LOC122268387 Ptep1.0/2.0 NW_024970623.1 92901 101331 - ELKS/Rab6-interacting/CAST family member 1-like aug3.g10461 NA 9e-112
LOC107449676 Ptep1.0/2.0 NW_024970623.1 145927 148601 - serine/threonine-protein kinase fray2 aug3.g10461 LOC107449676 0
LOC107449606 Ptep1.0/2.0 NW_024970623.1 168521 187090 - exocyst complex component 7 aug3.g10463 LOC107449606 0
LOC107448979 Ptep1.0/2.0 NW_024971110.1 132418 133197 - uncharacterized LOC107448979 aug3.g20550,aug3.g16483,aug3.g10842,aug3.g17302,aug3.g10467 LOC107448979 0
LOC122272318 Ptep1.0/2.0 NW_024971781.1 46085 46882 + craniofacial development protein 2-like aug3.g10469 NA 1e-152
LOC122272910 Ptep1.0/2.0 NW_024973269.1 584 1422 + uncharacterized LOC122272910 aug3.g10465 NA 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02