Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107451282 Ptep1.0/2.0 NW_024969792.1 33805 71649 + glucose dehydrogenase [FAD, quinone] aug3.g10570 LOC107451282 0
LOC107451275 Ptep1.0/2.0 NW_024969792.1 74103 120219 - glucose dehydrogenase [FAD, quinone] aug3.g10571 LOC107451275 0
LOC107451299 Ptep1.0/2.0 NW_024969792.1 146749 154125 + tubulin alpha chain, testis-specific aug3.g10572 LOC107451299 0
LOC110282023 Ptep1.0/2.0 NW_024969792.1 280119 287570 + histone H1.M6.2 aug3.g10574 LOC110282023 0
LOC107451308 Ptep1.0/2.0 NW_024969792.1 307542 318167 + 60S ribosomal protein L10a-2 aug3.g10576 LOC107451308 0
LOC107451255 Ptep1.0/2.0 NW_024969792.1 320484 331620 - uncharacterized LOC107451255 aug3.g10577 LOC107451255 0
LOC107451262 Ptep1.0/2.0 NW_024969792.1 334945 353268 - eukaryotic translation elongation factor 1 epsilon-1 aug3.g10578 LOC107451262 0
LOC107451314 Ptep1.0/2.0 NW_024969792.1 353446 367136 + probable peroxisomal membrane protein PEX13 aug3.g10579 LOC107451314 0
LOC107441194 Ptep1.0/2.0 NW_024969792.1 937593 951173 - tubulin alpha-1B chain aug3.g27227,aug3.g10572,aug3.g19712 LOC107441194 0
LOC122271350 Ptep1.0/2.0 NW_024970745.1 178102 181958 - tubulin alpha chain-like aug3.g10572 NA 5e-142
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02