Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445444 Ptep1.0/2.0 NW_024970009.1 446937 517061 - motor neuron and pancreas homeobox protein 1 aug3.g1062 LOC107445444 0
LOC107451981 Ptep1.0/2.0 NW_024970050.1 1431 80516 + polycomb group RING finger protein 3 aug3.g10623 LOC107451981 0
LOC107452007 Ptep1.0/2.0 NW_024970050.1 108156 174835 + BRISC complex subunit Abraxas 2 aug3.g10624 LOC107452007 0
LOC107452016 Ptep1.0/2.0 NW_024970050.1 188954 249831 - probable E3 ubiquitin-protein ligase RNF217 aug3.g10625 LOC107452016 0
LOC107452026 Ptep1.0/2.0 NW_024970050.1 258189 362143 - teneurin-m-like aug3.g10626 LOC107452026 0
LOC122270103 Ptep1.0/2.0 NW_024970050.1 378327 380270 + uncharacterized LOC122270103 aug3.g10627 NA 0
LOC107451966 Ptep1.0/2.0 NW_024970428.1 163168 166133 - cullin-1-like aug3.g10620 LOC107451966 0
LOC107451879 Ptep1.0/2.0 NW_024970428.1 166273 233990 + bromodomain-containing protein 8 aug3.g10621 LOC107451879 0
LOC107451889 Ptep1.0/2.0 NW_024970428.1 238722 344467 - ubiquitin carboxyl-terminal hydrolase 32 aug3.g10622 LOC107451889 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02