Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445638 Ptep1.0/2.0 NW_024969645.1 160942 180000 - mediator of RNA polymerase II transcription subunit 19 aug3.g1099,aug3.g20845 LOC107445638 0
LOC107457223 Ptep1.0/2.0 NW_024969796.1 36508 89634 + G-protein coupled receptor 52-like aug3.g10991 LOC107457223 0
LOC107457227 Ptep1.0/2.0 NW_024969796.1 57376 58464 + AN1-type zinc finger protein 6-like aug3.g10990 LOC107457227 0
LOC107457224 Ptep1.0/2.0 NW_024969796.1 122589 186063 + uncharacterized LOC107457224 aug3.g10993,aug3.g21550 LOC107457224 0
LOC107457228 Ptep1.0/2.0 NW_024969796.1 191085 214398 - venom protease-like aug3.g10994 LOC107457228 0
LOC107457230 Ptep1.0/2.0 NW_024969796.1 217133 228396 - inner centromere protein-like aug3.g10994 LOC107457230 0
LOC107457231 Ptep1.0/2.0 NW_024969796.1 243758 266655 + phospholipid hydroperoxide glutathione peroxidase-like aug3.g10995,aug3.g10996 LOC107457231 0
LOC122269357 Ptep1.0/2.0 NW_024969796.1 296781 302333 - uncharacterized LOC122269357 aug3.g10997 NA 0
LOC107457229 Ptep1.0/2.0 NW_024969796.1 345135 348272 + transcription factor Sox-21-B aug3.g10998 LOC107457229 0
LOC107457233 Ptep1.0/2.0 NW_024970928.1 1754 84945 - maestro heat-like repeat-containing protein family member 1 aug3.g10999,aug3.g14300,aug3.g3274 LOC107440164,LOC107457233 0
LOC122273731 Ptep1.0/2.0 NW_024979221.1 48 2196 + uncharacterized LOC122273731 aug3.g10993 NA 3e-174
11 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02