Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445630 Ptep1.0/2.0 NW_024969645.1 602883 615409 + protein ABHD11 aug3.g1110,aug3.g22746 LOC107445630 0
LOC110282489 Ptep1.0/2.0 NW_024969664.1 361903 364516 - zinc finger protein 271-like aug3.g11109 LOC110282489 0
LOC107457144 Ptep1.0/2.0 NW_024969699.1 521240 524759 + zinc finger protein 271 aug3.g11109 LOC107457144 0
LOC107457349 Ptep1.0/2.0 NW_024969819.1 1595101 1618797 + methionine--tRNA ligase, mitochondrial aug3.g11101 LOC107457349 0
LOC107457347 Ptep1.0/2.0 NW_024969819.1 1621261 1658509 - uncharacterized LOC107457347 aug3.g11100 LOC107457347 0
LOC107440300 Ptep1.0/2.0 NW_024970424.1 89142 93904 + zinc finger protein 808 aug3.g11109 LOC107440300 0
LOC107440881 Ptep1.0/2.0 NW_024970539.1 265732 270545 - gastrula zinc finger protein XlCGF71.1-like aug3.g11109 LOC107440881 0
LOC107457374 Ptep1.0/2.0 NW_024970621.1 697 5722 - zinc finger protein 850-like aug3.g11109 LOC107457374 0
LOC107457379 Ptep1.0/2.0 NW_024970621.1 23433 24635 - ATPase ASNA1 homolog aug3.g11108 LOC107457379 0
LOC107457373 Ptep1.0/2.0 NW_024970621.1 24882 64756 + protein SMG5 aug3.g11107 LOC107457373 0
LOC107457378 Ptep1.0/2.0 NW_024970621.1 68836 84808 - eukaryotic translation elongation factor 2 aug3.g11106 LOC107457378 0
LOC107457376 Ptep1.0/2.0 NW_024970621.1 136797 162602 - piwi-like protein 1 aug3.g11104,aug3.g24200 LOC107457376 0
LOC107457377 Ptep1.0/2.0 NW_024970621.1 167961 216701 + putative carbonic anhydrase 3 aug3.g11103 LOC107457377 0
LOC107457372 Ptep1.0/2.0 NW_024970621.1 217850 254203 - nephrin aug3.g11102,aug3.g22710 LOC107457372 0
LOC107446896 Ptep1.0/2.0 NW_024970667.1 73 4651 + zinc finger protein 845-like aug3.g11109 LOC107446896 0
LOC107446448 Ptep1.0/2.0 NW_024972350.1 104045 107616 - zinc finger protein 271-like aug3.g11109 LOC107446448 0
16 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02