Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268815 Ptep1.0/2.0 NW_024969682.1 1769699 1840423 - zinc finger MYM-type protein 1-like aug3.g11252 NA 0
LOC107445669 Ptep1.0/2.0 NW_024969687.1 63903 70447 + uncharacterized LOC107445669 aug3.g1125 LOC107445669 0
LOC122269263 Ptep1.0/2.0 NW_024969778.1 115940 117343 + uncharacterized LOC122269263 aug3.g26848,aug3.g11251 NA 0
LOC110282030 Ptep1.0/2.0 NW_024969821.1 671028 678079 - zinc finger MYM-type protein 1-like aug3.g11252 LOC110282030 0
LOC122270181 Ptep1.0/2.0 NW_024970083.1 188283 189578 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g11251 NA 3e-21
LOC107457525 Ptep1.0/2.0 NW_024970358.1 61402 77615 - rho-related GTP-binding protein RhoE-like aug3.g11259,aug3.g10986,aug3.g6798,aug3.g12449,aug3.g6435,aug3.g18641,aug3.g27190,aug3.g23455,aug3.g14611,aug3.g11493 LOC107457525 0
LOC107457530 Ptep1.0/2.0 NW_024970358.1 132833 141272 + proline-rich protein 4 aug3.g11258 LOC107457530 0
LOC107457524 Ptep1.0/2.0 NW_024970358.1 330274 339717 + mitochondrial translation release factor in rescue-like aug3.g11255 LOC107457524 0
LOC107457529 Ptep1.0/2.0 NW_024970358.1 330441 332641 + uncharacterized LOC107457529 aug3.g11256 LOC107457529 0
LOC107457528 Ptep1.0/2.0 NW_024970358.1 341945 355741 - synaptic vesicle membrane protein VAT-1 homolog aug3.g11254 LOC107457528 0
LOC107457526 Ptep1.0/2.0 NW_024970358.1 355898 379892 + coiled-coil domain-containing protein 177 aug3.g11253 LOC107457526 0
LOC122270866 Ptep1.0/2.0 NW_024970416.1 206387 207679 - general transcription factor II-I repeat domain-containing protein 2-like aug3.g11251 NA 3e-21
LOC107439193 Ptep1.0/2.0 NW_024970656.1 11008 11731 - zinc finger MYM-type protein 1-like aug3.g11252,aug3.g17758,aug3.g9201,aug3.g2277 LOC107439193 0
LOC122271237 Ptep1.0/2.0 NW_024970656.1 276312 277061 - uncharacterized LOC122271237 aug3.g11252 NA 0
LOC122271400 Ptep1.0/2.0 NW_024970775.1 215752 219960 + uncharacterized LOC122271400 aug3.g11252 NA 0
LOC122271800 Ptep1.0/2.0 NW_024971157.1 14001 17342 + zinc finger MYM-type protein 1-like aug3.g11252 NA 0
LOC122273624 Ptep1.0/2.0 NW_024977849.1 217 2123 - uncharacterized LOC122273624 aug3.g11252 NA 0
LOC122273905 Ptep1.0/2.0 NW_024983054.1 118739 120034 + general transcription factor II-I repeat domain-containing protein 2-like aug3.g11251 NA 3e-21
LOC122273967 Ptep1.0/2.0 NW_024985135.1 562 1044 + uncharacterized LOC122273967 aug3.g11252 NA 0
LOC122268472 Ptep1.0/2.0 NW_024993830.1 187 1005 - zinc finger MYM-type protein 1-like aug3.g11252 NA 0
20 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02