Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445714 Ptep1.0/2.0 NW_024969638.1 2361229 2364140 + speckle-type POZ protein B aug3.g1140,aug3.g15658,aug3.g15659,aug3.g7185 LOC107445714 0
LOC107453980 Ptep1.0/2.0 NW_024970020.1 1155784 1158506 - zinc finger protein 271-like aug3.g11403 LOC107453980 2e-49
LOC107436236 Ptep1.0/2.0 NW_024970552.1 321627 341462 + uncharacterized LOC107436236 aug3.g11409 LOC107436236 0
LOC107436226 Ptep1.0/2.0 NW_024970560.1 2883 48325 + cytochrome P450 3A8 aug3.g11406 LOC107436226 0
LOC107436224 Ptep1.0/2.0 NW_024970560.1 53807 103560 - uncharacterized LOC107436224 aug3.g11405 LOC107436224 0
LOC107436223 Ptep1.0/2.0 NW_024970560.1 90108 171781 + paired amphipathic helix protein Sin3a aug3.g11403 LOC107436223 0
LOC107436220 Ptep1.0/2.0 NW_024970560.1 196733 210335 + uncharacterized LOC107436220 aug3.g11401 LOC107436220 0
LOC107436222 Ptep1.0/2.0 NW_024970560.1 214504 253434 - ATP-dependent RNA helicase DDX39A aug3.g11400 LOC107436222 0
LOC107436228 Ptep1.0/2.0 NW_024971893.1 5480 32918 - protein KTI12 homolog aug3.g11407 LOC107436228 0
LOC107436227 Ptep1.0/2.0 NW_024971893.1 33026 35106 + FAST kinase domain-containing protein 5, mitochondrial aug3.g11408 LOC107436227 0
10 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02