Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445719 Ptep1.0/2.0 NW_024969638.1 2889380 2897875 + uncharacterized LOC107445719 aug3.g1153 LOC107445719 1e-145
LOC107436408 Ptep1.0/2.0 NW_024969724.1 256271 267385 + galactoside 2-alpha-L-fucosyltransferase Sec1 aug3.g11530 LOC107436408 0
LOC107436409 Ptep1.0/2.0 NW_024969724.1 284497 324971 + fatty-acid amide hydrolase 2-B aug3.g11531 LOC107436409 0
LOC122269664 Ptep1.0/2.0 NW_024969891.1 120705 141330 - degenerin mec-10-like aug3.g11533 NA 0
LOC107436412 Ptep1.0/2.0 NW_024969891.1 180853 200757 + nuclear cap-binding protein subunit 3 aug3.g11534 LOC107436412 0
LOC107436411 Ptep1.0/2.0 NW_024969891.1 213370 249429 + acid-sensing ion channel 1C-like aug3.g11535 LOC107436411,LOC107436410 0
LOC107436414 Ptep1.0/2.0 NW_024969891.1 313906 320418 - chymotrypsin inhibitor aug3.g11536 LOC107436414 0
LOC107455141 Ptep1.0/2.0 NW_024971121.1 33013 149593 + pseudogene aug3.g6852,aug3.g6853,aug3.g5152,aug3.g13817,aug3.g27437,aug3.g2443,aug3.g815,aug3.g18721,aug3.g27682,aug3.g6591,aug3.g9034,aug3.g23308,aug3.g8240,aug3.g11539,aug3.g15522,aug3.g5586,aug3.g5083,aug3.g10191,aug3.g3609,aug3.g22834,aug3.g17162,aug3.g27259,aug LOC107455141 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02