Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107445726 Ptep1.0/2.0 NW_024969638.1 3023344 3221278 + neuroligin-4, X-linked aug3.g1157,aug3.g1155 LOC107445726 0
LOC107456898 Ptep1.0/2.0 NW_024969708.1 2432417 2465465 - uncharacterized LOC107456898 aug3.g8917,aug3.g11572 LOC107456898 0
LOC107436448 Ptep1.0/2.0 NW_024969708.1 2626358 2721170 + uncharacterized LOC107436448 aug3.g11574 LOC107436448 0
LOC107436447 Ptep1.0/2.0 NW_024969708.1 2751037 3001531 + sex comb on midleg-like protein 4 aug3.g12472,aug3.g11575,aug3.g11576 LOC107436447 0
LOC107436476 Ptep1.0/2.0 NW_024969800.1 1015923 1066587 + homeobox protein TGIF2LX aug3.g11579 LOC107436476 0
LOC122268338 Ptep1.0/2.0 NW_024969800.1 1081708 1088589 - triadin-like aug3.g11578 LOC107447326 0
LOC122271106 Ptep1.0/2.0 NW_024970568.1 23346 25261 + uncharacterized LOC122271106 aug3.g11577 NA 5e-44
LOC107436443 Ptep1.0/2.0 NW_024970916.1 60984 86261 - pollen-specific leucine-rich repeat extensin-like protein 1 aug3.g11571,aug3.g11210,aug3.g26088,aug3.g16761,aug3.g25216,aug3.g18234 LOC107436443 0
8 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02