Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437662 Ptep1.0/2.0 NW_024969653.1 988319 1050375 - RING finger protein 17 aug3.g12508,aug3.g11774 LOC107437662 0
LOC107436701 Ptep1.0/2.0 NW_024969653.1 1050559 1070182 + U3 small nucleolar RNA-interacting protein 2 aug3.g11773 LOC107436701 0
LOC107436697 Ptep1.0/2.0 NW_024969653.1 1071595 1095218 - von Willebrand factor C and EGF domain-containing protein aug3.g11772 LOC107436697 0
LOC107436696 Ptep1.0/2.0 NW_024969653.1 1115789 1124542 - probable maltase-glucoamylase 2 aug3.g11771,aug3.g22900 LOC107436696 0
LOC107436700 Ptep1.0/2.0 NW_024969653.1 1125499 1158263 - uncharacterized LOC107436700 aug3.g11771 LOC107436700 0
LOC107436695 Ptep1.0/2.0 NW_024969653.1 1193324 1304895 - mucin-17 aug3.g11770,aug3.g11771,aug3.g24427 LOC107436695 0
LOC122268812 Ptep1.0/2.0 NW_024969680.1 1959852 1962608 - peptidoglycan recognition protein 1-like aug3.g1177 NA 0
LOC107445817 Ptep1.0/2.0 NW_024969680.1 1961864 1982243 - peptidoglycan recognition protein 3 aug3.g1176,aug3.g1177 LOC107445817 0
LOC107436702 Ptep1.0/2.0 NW_024970033.1 133538 234908 - cGMP-dependent protein kinase 1-like aug3.g11775 LOC107436702 0
LOC107436704 Ptep1.0/2.0 NW_024970033.1 237803 239201 + hexokinase type 2-like aug3.g11776 LOC107436704 0
LOC107436706 Ptep1.0/2.0 NW_024970033.1 243515 338306 + sorbin and SH3 domain-containing protein 1 aug3.g11777 LOC107436706,LOC107436703,LOC107439445 0
LOC107436709 Ptep1.0/2.0 NW_024970033.1 345787 400496 - serine/threonine-protein phosphatase 2B catalytic subunit 2 aug3.g11779,aug3.g11778 LOC107436709 0
LOC122273808 Ptep1.0/2.0 NW_024980591.1 6 2867 - mucin-17-like aug3.g11770 NA 0
13 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02