Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107437074 Ptep1.0/2.0 NW_024969598.1 929023 947135 + uncharacterized LOC107437074 aug3.g12018,aug3.g19416 LOC107437074 0
LOC107437067 Ptep1.0/2.0 NW_024969598.1 948646 967970 - uncharacterized LOC107437067 aug3.g12017 LOC107437067 0
LOC107437066 Ptep1.0/2.0 NW_024969598.1 979882 993447 - DENN domain-containing protein 11 aug3.g12016 LOC107437066 0
LOC107437064 Ptep1.0/2.0 NW_024969598.1 993151 1041009 + kinase D-interacting substrate of 220 kDa B aug3.g12015 LOC107437064 0
LOC107437072 Ptep1.0/2.0 NW_024969598.1 1047110 1056886 - RNA-binding protein pno1 aug3.g12014 LOC107437072 9e-179
LOC107437063 Ptep1.0/2.0 NW_024969598.1 1057011 1066977 + pinin aug3.g12013,aug3.g23061 LOC107437063 0
LOC107437070 Ptep1.0/2.0 NW_024969598.1 1098318 1158633 + protein virilizer homolog aug3.g12011 LOC107437070 0
LOC107437071 Ptep1.0/2.0 NW_024969598.1 1150549 1150786 - uncharacterized LOC107437071 aug3.g12011 LOC107437071 4e-37
LOC107437069 Ptep1.0/2.0 NW_024969598.1 1164158 1170188 - ras-related protein Rab-43 aug3.g12010 LOC107437069 0
LOC107445996 Ptep1.0/2.0 NW_024969955.1 555476 571136 + suppressor of tumorigenicity 14 protein homolog aug3.g1201 LOC107445996 0
LOC107437077 Ptep1.0/2.0 NW_024970130.1 310855 458757 - BTB/POZ domain-containing protein 9 aug3.g12019 LOC107437077 0
LOC122271534 Ptep1.0/2.0 NW_024970907.1 181983 184306 + protein virilizer homolog aug3.g12011 NA 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02