Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268756 Ptep1.0/2.0 NW_024969669.1 2192273 2192737 - uncharacterized LOC122268756 aug3.g12021 NA 2e-57
LOC107436395 Ptep1.0/2.0 NW_024969724.1 63746 64360 - SCAN domain-containing protein 3-like aug3.g24187,aug3.g12021 LOC107436395 0
LOC110283595 Ptep1.0/2.0 NW_024969881.1 1110603 1110980 - SCAN domain-containing protein 3-like aug3.g12021 LOC110283595 1e-144
LOC107445999 Ptep1.0/2.0 NW_024969955.1 503826 537127 + COP9 signalosome complex subunit 1 aug3.g1202 LOC107445999 0
LOC107437083 Ptep1.0/2.0 NW_024970130.1 2398 19456 + 17-beta-hydroxysteroid dehydrogenase type 6 aug3.g12029 LOC107437083 0
LOC107437082 Ptep1.0/2.0 NW_024970130.1 9321 40292 - crossover junction endonuclease MUS81 aug3.g12028 LOC107437082 0
LOC107437075 Ptep1.0/2.0 NW_024970130.1 52521 163181 - cyclin-dependent kinase 14 aug3.g12027,aug3.g12025 LOC107437081,LOC107437075 0
LOC107437078 Ptep1.0/2.0 NW_024970130.1 243255 254659 - uncharacterized LOC107437078 aug3.g12023 LOC107437078 0
LOC107437080 Ptep1.0/2.0 NW_024970130.1 266179 277887 - uncharacterized LOC107437080 aug3.g12023 LOC107437080 7e-155
LOC122270308 Ptep1.0/2.0 NW_024970130.1 288556 290196 + SCAN domain-containing protein 3-like aug3.g12021 NA 0
LOC107437079 Ptep1.0/2.0 NW_024970130.1 293831 308382 + uncharacterized LOC107437079 aug3.g12020 LOC107437079 0
LOC107441807 Ptep1.0/2.0 NW_024970916.1 153953 158599 - uncharacterized LOC107441807 aug3.g12022 LOC107441807 2e-19
LOC122271682 Ptep1.0/2.0 NW_024971052.1 150983 151989 + protein ZBED8-like aug3.g12021 NA 0
LOC122272941 Ptep1.0/2.0 NW_024973413.1 10091 10507 + protein ZBED8-like aug3.g12021 NA 9e-171
14 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02