Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446082 Ptep1.0/2.0 NW_024969638.1 239479 381182 + sodium- and chloride-dependent glycine transporter 1 aug3.g1218 LOC107446082 0
LOC107437291 Ptep1.0/2.0 NW_024969669.1 1112337 1125496 + PWWP domain-containing protein 2B aug3.g12188 LOC107437291 0
LOC107437286 Ptep1.0/2.0 NW_024970201.1 97114 110753 - membrane-associated progesterone receptor component 1 aug3.g12180,aug3.g12179 LOC107437286 0
LOC107445612 Ptep1.0/2.0 NW_024970201.1 134094 367926 + neurobeachin aug3.g12182,aug3.g24475,aug3.g18642,aug3.g24905 LOC107445612,LOC107446264 0
LOC107437287 Ptep1.0/2.0 NW_024970383.1 32839 327576 + tyrosine-protein phosphatase Lar aug3.g12186,aug3.g22417 LOC107437287 0
LOC107437290 Ptep1.0/2.0 NW_024970383.1 328351 345386 - GPN-loop GTPase 2 aug3.g12185 LOC107437290 0
LOC107437289 Ptep1.0/2.0 NW_024970383.1 351814 355974 + 60S ribosomal protein L32 aug3.g12184 LOC107437289 0
LOC107437288 Ptep1.0/2.0 NW_024970383.1 359266 382742 - lipoyl synthase, mitochondrial aug3.g12183 LOC107437288 0
LOC122273742 Ptep1.0/2.0 NW_024979437.1 1 3295 - uncharacterized LOC122273742 aug3.g12186 NA 2e-94
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02