Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446093 Ptep1.0/2.0 NW_024969638.1 745130 764392 + 26S proteasome regulatory subunit 4 aug3.g1227 LOC107446093 0
LOC107437413 Ptep1.0/2.0 NW_024969849.1 789143 814803 - uncharacterized LOC107437413 aug3.g12271,aug3.g21643 LOC107451929,LOC107437413 0
LOC107437411 Ptep1.0/2.0 NW_024969849.1 820691 887067 - calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type aug3.g12272 LOC107437411 0
LOC107437414 Ptep1.0/2.0 NW_024969849.1 951420 1007090 - pre-piRNA 3'-exonuclease trimmer aug3.g12274 LOC107437414 0
LOC107437415 Ptep1.0/2.0 NW_024969849.1 1007289 1022745 + THO complex subunit 7 homolog aug3.g12275 LOC107437415 0
LOC107437419 Ptep1.0/2.0 NW_024970277.1 315627 392645 + aspartate, glycine, lysine and serine-rich protein aug3.g12278,aug3.g12280 LOC107437419 0
LOC107437416 Ptep1.0/2.0 NW_024970642.1 15042 70098 - phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform aug3.g12276 LOC107437416 0
LOC107437418 Ptep1.0/2.0 NW_024970642.1 78879 254032 + serine/threonine-protein kinase SMG1 aug3.g12277 LOC107437418 0
LOC122272543 Ptep1.0/2.0 NW_024972206.1 3443 28817 + short-chain specific acyl-CoA dehydrogenase, mitochondrial-like aug3.g12270 NA 0
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02