Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107438104 Ptep1.0/2.0 NW_024969629.1 1319096 1320300 - 39S ribosomal protein L44, mitochondrial-like aug3.g12819,aug3.g9477 LOC107438104 0
LOC107446235 Ptep1.0/2.0 NW_024969733.1 957288 1094761 - la-related protein 4 aug3.g1282,aug3.g1281,aug3.g1283 LOC107446235 0
LOC107438087 Ptep1.0/2.0 NW_024969772.1 2309 18710 - zinc metalloproteinase nas-36 aug3.g12811,aug3.g22086 LOC107438087 0
LOC107438094 Ptep1.0/2.0 NW_024969772.1 41252 55216 + retinal homeobox protein Rax aug3.g12810 LOC107438094 0
LOC107436355 Ptep1.0/2.0 NW_024969815.1 763066 807749 - oocyte zinc finger protein XlCOF6.1 aug3.g18966,aug3.g16370,aug3.g11139,aug3.g23931,aug3.g10099,aug3.g19028,aug3.g26680,aug3.g658,aug3.g6866,aug3.g3777,aug3.g13767,aug3.g1246,aug3.g20365,aug3.g12813,aug3.g18681,aug3.g5858,aug3.g20791,aug3.g17997,aug3.g11223,aug3.g15649,aug3.g3781,aug3.g2204 LOC107454207,LOC107436355 0
LOC122269946 Ptep1.0/2.0 NW_024969990.1 640161 640682 - uncharacterized LOC122269946 aug3.g25387,aug3.g12817,aug3.g23465,aug3.g8236,aug3.g27177,aug3.g25534 NA 0
LOC107446598 Ptep1.0/2.0 NW_024970209.1 301265 301846 + uncharacterized LOC107446598 aug3.g10211,aug3.g12814 LOC107446598 0
LOC107438092 Ptep1.0/2.0 NW_024970316.1 24416 59227 + uncharacterized LOC107438092 aug3.g12811,aug3.g12812 LOC107438091,LOC107438092 0
LOC122270680 Ptep1.0/2.0 NW_024970316.1 63574 80737 + uncharacterized LOC122270680 aug3.g12813 NA 0
LOC107438089 Ptep1.0/2.0 NW_024970316.1 82897 84003 - uncharacterized LOC107438089 aug3.g12815,aug3.g16014,aug3.g2002,aug3.g18903,aug3.g13775 LOC107438089 0
LOC122272142 Ptep1.0/2.0 NW_024971555.1 61566 83165 - uncharacterized LOC122272142 aug3.g12813 NA 0
LOC122272310 Ptep1.0/2.0 NW_024971764.1 48259 55376 - uncharacterized LOC122272310 aug3.g12818,aug3.g13659 NA 0
LOC107449664 Ptep1.0/2.0 NW_024972127.1 2020 28763 - blastula protease 10 aug3.g20856,aug3.g12816 LOC107449664 0
LOC122272494 Ptep1.0/2.0 NW_024972127.1 34576 37980 - uncharacterized LOC122272494 aug3.g12812 LOC107438092 8e-122
LOC107438096 Ptep1.0/2.0 NW_024975105.1 1759 4590 - SHC SH2 domain-binding protein 1 aug3.g12818 LOC107438096 3e-150
15 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02