Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107446265 Ptep1.0/2.0 NW_024969609.1 7978 314412 - nesprin-1 aug3.g1291,aug3.g1289,aug3.g24162,aug3.g24562,aug3.g1292,aug3.g24179,aug3.g15792 LOC107446265,LOC107441794 0
LOC107456746 Ptep1.0/2.0 NW_024969648.1 165979 168308 + uncharacterized LOC107456746 aug3.g12913 LOC107456746 9e-177
LOC122269318 Ptep1.0/2.0 NW_024969786.1 1352117 1358210 - uncharacterized LOC122269318 aug3.g3131,aug3.g12916 NA 0
LOC107438219 Ptep1.0/2.0 NW_024969817.1 675109 713115 + protein AF-10 aug3.g12912 LOC107438219 0
LOC107455317 Ptep1.0/2.0 NW_024969817.1 724630 752149 - ubiquitin-conjugating enzyme E2 Q1-like aug3.g22274,aug3.g12911 LOC107438218,LOC107455317 0
LOC107438221 Ptep1.0/2.0 NW_024969817.1 752197 764515 + dynactin subunit 3 aug3.g12910,aug3.g17088 LOC107438221 0
LOC122272396 Ptep1.0/2.0 NW_024971950.1 1571 2203 - pseudogene aug3.g12919 NA 0
LOC122272397 Ptep1.0/2.0 NW_024971950.1 2840 7120 - uncharacterized LOC122272397 aug3.g12919 NA 4e-113
LOC122272398 Ptep1.0/2.0 NW_024971950.1 14491 28017 - uncharacterized LOC122272398 aug3.g12919 NA 0
LOC122272399 Ptep1.0/2.0 NW_024971950.1 40767 41394 - uncharacterized LOC122272399 aug3.g12918,aug3.g1317 NA 0
LOC122272793 Ptep1.0/2.0 NW_024972854.1 893 14267 - dynactin subunit 3-like aug3.g12910 NA 0
LOC107438222 Ptep1.0/2.0 NW_024975286.1 2728 3981 + uncharacterized LOC107438222 aug3.g12913 LOC107438222 0
12 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02