Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC122268799 Ptep1.0/2.0 NW_024969678.1 760261 760566 - ATP-dependent DNA helicase pif1-like aug3.g13058 NA 3e-134
LOC122268855 Ptep1.0/2.0 NW_024969688.1 1452291 1453037 - ATP-dependent DNA helicase pif1-like aug3.g13058 NA 0
LOC122269114 Ptep1.0/2.0 NW_024969741.1 937252 939493 + piggyBac transposable element-derived protein 4-like aug3.g13055,aug3.g5718,aug3.g10795,aug3.g23275 NA 0
LOC122269421 Ptep1.0/2.0 NW_024969815.1 376432 378477 - piggyBac transposable element-derived protein 4-like aug3.g13055,aug3.g20183 NA 0
LOC122269479 Ptep1.0/2.0 NW_024969830.1 890622 891182 - ATP-dependent DNA helicase pif1-like aug3.g13058 NA 0
LOC107446361 Ptep1.0/2.0 NW_024970064.1 551989 561838 + uncharacterized LOC107446361 aug3.g1305 LOC107446361 0
LOC107446354 Ptep1.0/2.0 NW_024970064.1 570234 591162 + cilia- and flagella-associated protein 36 aug3.g1305 LOC107446354 0
LOC122270371 Ptep1.0/2.0 NW_024970152.1 410090 413222 + ATP-dependent DNA helicase PIF1-like aug3.g13058 NA 0
LOC107455408 Ptep1.0/2.0 NW_024970235.1 231333 232031 + ATP-dependent DNA helicase PIF1-like aug3.g13058 LOC107455408 0
LOC107436609 Ptep1.0/2.0 NW_024970320.1 530694 531419 + uncharacterized LOC107436609 aug3.g14517,aug3.g26066,aug3.g26470,aug3.g23930,aug3.g13058,aug3.g10340 LOC107436609 0
LOC110283234 Ptep1.0/2.0 NW_024970534.1 12818 14724 - uncharacterized LOC110283234 aug3.g13055 LOC110283234 6e-158
LOC122271287 Ptep1.0/2.0 NW_024970696.1 188183 241891 - uncharacterized LOC122271287 aug3.g13055 NA 0
LOC107438397 Ptep1.0/2.0 NW_024970868.1 11487 39138 - RNA polymerase-associated protein LEO1 aug3.g13051 LOC107438397 0
LOC107438398 Ptep1.0/2.0 NW_024970868.1 46320 55885 + uncharacterized LOC107438398 aug3.g13052,aug3.g13053 LOC107438398 0
LOC107438399 Ptep1.0/2.0 NW_024970868.1 56600 67499 + uncharacterized LOC107438399 aug3.g13053 LOC107438399 0
LOC107438400 Ptep1.0/2.0 NW_024970868.1 121899 157076 - nuclear pore complex protein Nup85 aug3.g13059 LOC107438400 0
LOC122272448 Ptep1.0/2.0 NW_024972038.1 8676 9047 + ATP-dependent DNA helicase PIF1-like aug3.g13058 NA 4e-178
LOC107445609 Ptep1.0/2.0 NW_024972767.1 10552 11076 + ATP-dependent DNA helicase pif1-like aug3.g13058 LOC107445609 0
LOC122273295 Ptep1.0/2.0 NW_024975251.1 262 5127 - RNA polymerase-associated protein LEO1-like aug3.g13051 LOC107438397 8e-172
19 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02