Pt_spiderBASE v3

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Single Cell/Nucleus UMAP Plot Search

Gene/Transcript Records
NCBI geneID (-> UMAP)Ptep1.0/2.0 (-> genome browser)Scaffold AN (-> genome browser)StartEnd+/-Productaug3ID in Ptep2geneID in Ptep2E-value(for checking the relationship)
LOC107439046 Ptep1.0/2.0 NW_024969672.1 778242 1093632 + homeobox protein extradenticle aug3.g13538,aug3.g27748,aug3.g27747 LOC107439046 0
LOC107446520 Ptep1.0/2.0 NW_024969740.1 710523 770022 + scavenger receptor class B member 1 aug3.g1353 LOC107446520 0
LOC107439044 Ptep1.0/2.0 NW_024971023.1 15138 31064 + biogenesis of lysosome-related organelles complex 1 subunit 1 aug3.g13535 LOC107439044 0
LOC107439043 Ptep1.0/2.0 NW_024971023.1 34088 49567 - partner of Y14 and mago aug3.g13534 LOC107439043 0
LOC107439042 Ptep1.0/2.0 NW_024971023.1 49570 70596 + xenotropic and polytropic retrovirus receptor 1 homolog aug3.g13533 LOC107439042 0
LOC107439040 Ptep1.0/2.0 NW_024971023.1 82878 117245 + elongation of very long chain fatty acids protein AAEL008004 aug3.g13531 LOC107439040 0
LOC107439041 Ptep1.0/2.0 NW_024971023.1 84930 102560 - Golgi-associated plant pathogenesis-related protein 1 aug3.g13532 LOC107439041 0
LOC122271648 Ptep1.0/2.0 NW_024971023.1 118582 130687 + elongation of very long chain fatty acids protein 7-like aug3.g13531 LOC107439040 0
LOC107448777 Ptep1.0/2.0 NW_024975936.1 2526 7384 + elongation of very long chain fatty acids protein AAEL008004 aug3.g13530 LOC107448777 8e-131
9 records were found.(Max.=1000)

Reference
Yasuko Akiyama-Oda, Takanori Akaiwa, and Hiroki Oda. (2022) Reconstruction of the Global Polarity of an Early Spider Embryo by Single-Cell and Single-Nucleus Transcriptome Analysis(Front. Cell Dev. Biol. 10:933220)

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Last updated by Hiroki Oda, 2022.11.02